Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0497 ATGTCTTCTAAGTTAAGTACAATGTCAAACTTTCTCATTATCCTTCTACCCTTATTTGCTACCCTAGCTTTAGGGGACACCCCTCCCTCCACAAGAGTCCCTCCTGGAACCATATGCAAATCCACCCCTGACCCATCTTATTGCAAATCTGTGCTGCCTACCCAAAATGGCAATGTCTATGACTATTGTCGTATCTCAGTTAAAAAATCATTATTTCAAACCACCATTTTCTTGAACTTAGTTAACATATATCTCCAGAAAAGTTCATCTCTTTCCACTCCCGAAATTCGTGCACTCCAAGATTGCAAATCCCTTGCTGAACTTAACCTTGATTTTCTGTCAAGTTCTTTCCAAACGGTTAACAAAACAAGTAGCTTTCTTCAAAGTTCACAAGCCGATGATATTCAAACCTTGCTTAGCGCCATTCTTACAAACCAGCAAACATGCTTAGATGGTCTTCAATCAACTAGCTTGAAAAATAGACTCTTTAGTTCAATTTCTAATGACACAAAACTTTTTAGTGTCTCTCTTGCTCTTTTCACAAAAGGTTGGGTTCCAAGCCACAAGAACAACCCTTCTACTTTTCATCCAACAAGGAAACAACTTGGATTTCAAAATGGGCAATTACCACTTAAGATGTCAAGTAGAACTCGTGCCATATACGAGTCAGTGAGTAAAAGAAAGCTTCTTCAGGTTACAGTGGACAACAATGTTATGGTGAGAGACATTGTGGTTGTTAGTCAAGATGGGAGTGGTAACTTCACTACAATCAATGATGCTATCGCTGCTGCACCAAACAAATCTTCATCTACAGATGGGTACTTCTTGATCTATGTGACTGCTGGTGTTTATGAAGAAAATGTGTCCATTGATAAGAAAAAGACGTATTTGATGATGGTTGGAGATGGCATCAACCAGACAATTATTACAGCAAATCGTAGTGTTGTTGATGGATGGACAACCTTCAACTCCGCATCTTTCGCTGTGGTTGGGAAAGGATTCGTGGGTGTGAACTTCACCGTCCGTAACACTGCCGGTGCAATAAAACACCAAGCAGTAGCACTTCGAAATGGAGCAGATTTGTCAACATTTTACACTTGCAGCTTTGAAGGATACCAAGACACGTTATACACTCATTCCTTACGACAATTCTTCAGAGAATGTGACATTTATGGCACTGTAGACTTCATATTTGGAAACGCTGCTGTTGTGTTACAAAATTGCAACTTGTACCCTCTTCTTCCTATGTCTGGGCAATTCAATGCTATCACTGCACAAGGCCGAACCGATCCAAACCAAAACACAGGCACTTCTATACACAACTGTACTATTAAAGCATCTGATGATTTAGCTGCGAATATTGATGCAGTTAAAACATATCTTGGAAGGCCTTGGAAAGAGTACTCTAGGACTGTTTACATGCAGAGTTTCATAGATAGTGTGGTTGATGTTAGTGGGTGGAATAAATGGGATGGTGATTTTGCTTTGAGTACGTTGTATTATGCTGAGTTTAATAATAGTGGACCAGGGTCTAGCACTGATCAGAGAGTCACATGGACGGGTTACCATGTGATTAATGACACTGATGCTGCTAATTTTACAGTCAATAATTTCTTGCTTGGTGATGTTTGGTTGCCACAGACGGGAGTTACTTACACCAGTAACTTAGTATAG 1674 0.3996 MSSKLSTMSNFLIILLPLFATLALGDTPPSTRVPPGTICKSTPDPSYCKSVLPTQNGNVYDYCRISVKKSLFQTTIFLNLVNIYLQKSSSLSTPEIRALQDCKSLAELNLDFLSSSFQTVNKTSSFLQSSQADDIQTLLSAILTNQQTCLDGLQSTSLKNRLFSSISNDTKLFSVSLALFTKGWVPSHKNNPSTFHPTRKQLGFQNGQLPLKMSSRTRAIYESVSKRKLLQVTVDNNVMVRDIVVVSQDGSGNFTTINDAIAAAPNKSSSTDGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINQTIITANRSVVDGWTTFNSASFAVVGKGFVGVNFTVRNTAGAIKHQAVALRNGADLSTFYTCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVLQNCNLYPLLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIKASDDLAANIDAVKTYLGRPWKEYSRTVYMQSFIDSVVDVSGWNKWDGDFALSTLYYAEFNNSGPGSSTDQRVTWTGYHVINDTDAANFTVNNFLLGDVWLPQTGVTYTSNLV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0497 557 Gene3D - 238 556 IPR012334 -
Lal12g0497 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 182 IPR035513 -
Lal12g0497 557 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 181 IPR006501 GO:0004857
Lal12g0497 557 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Lal12g0497 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 182 IPR035513 -
Lal12g0497 557 Pfam Pectinesterase 244 542 IPR000070 GO:0030599|GO:0042545
Lal12g0497 557 Pfam Plant invertase/pectin methylesterase inhibitor 37 179 IPR006501 GO:0004857
Lal12g0497 557 PANTHER PECTINESTERASE 17 554 - -
Lal12g0497 557 SMART PMEI_2 30 179 IPR006501 GO:0004857
Lal12g0497 557 CDD PMEI-like_3 37 184 - -
Lal12g0497 557 PANTHER PECTINESTERASE 17 554 - -
Lal12g0497 557 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0497 Lal-Chr12 3554359 3557008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0497 8 557 Carbohydrate Esterase AT4G02330 61.364 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0497 K01051 - gmx:100790729 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0497 12 3554359 3557008 Lal12g0497 12 3554359 3557008 ECH