Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0486 ATGAGTAGCATGCCAAATGGGGGTGATTCTCGAAAGATGTCCAAGGGCCGCCGGTCATCATTATCAGTTGAAGAAGGTAGTGAAAGTCTTTTAATGAAAGGCCCATGGACAGCAGCAGAGGATGCGATTTTGACAGAATATGTCAGAAAACATGGAGAGGGAAACTGGAATGCAGTACAGAAGCATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTAAGACCTGACTTGAGAAAGGGTGCATTTACTCCAGAGGAAGAGGATCGAATCATTGATCTCCATTCTAGAATAGGAAATAAGTGGGCTCGAATGGCTGCCGAGTTTGAAGTCATGATAAAGTCATCACCAGGGAGTGGGATGTTGCCAGGACGTACGGACAATGAGATAAAGAACTTTTGGAACACAAGAGTTAAGAGAATGCAACGTGCTGACTTACCAATCTATCCTCCTCACATATACCTACGGGCGTTGAGCGACAATCAAGAAAGTTTAGATGTTGGCACCGTAAAAAATGAATCTGGCCAACATGATGATCCCTCACAGACAGACAATTTTGATATACCAGATCTTGAATTCAAAAATTACAAAATTCACCAGGGTCTATCTTATGCGCCAGCAATTTTTGATATACCTGAAAGCAACATGTTCGAACAACCTTCAGTCTCATCCCGTAGTTATAATGCCATGTCCCCAATGCATCCCAGAAAGCGCTTTCGAGAGGCAGATGTGTTATACGATAGTAGTTTTGATGGTTACATCAGTAGTGCTGTCCCACTATTTGATCAGCATGACTATTACACTAGTGAGAAAGTTTCTGACCATCCTAGGTTTTCTTCTCCATGTGACCTCATTCTTGACACTGGCCAGTTCCATTGTTATAACTTTCCTGGCAGCCATGCCACTCGAAATGGCAACACTTCTTCTTCTACGTCCATAACCGGGGCCATGAAGTCGGAGCTCCCTTCACTCCAATATTTAGAAGACCAACAAGGTGTCTGGGGCATGCCCACATCCCCACTTCCTTCACTTGAGTCTGTTGATACATTGATTCAGTCTCCTCCAACTGATCCTGCTCGGTCAGACCCTCTTTCTCCACGGAGCAGTGGTTTGTTGGATGCAATAATCTGGGAATCCAAAAATTTGAAAGGCTCAAATAGTAATTCATTGAAACAGACAGCCGGAAATTGTATCTCCAATGAAGCAATCAAGAGTTCAACCTTGAATCCCCGAATGACAGAATGTGATGAACAATGGGAGCTAGATTCCCCCTTAGGTCAGTCTGCTGCTTCGGTTCTGACCGACTAA 1326 0.4427 MSSMPNGGDSRKMSKGRRSSLSVEEGSESLLMKGPWTAAEDAILTEYVRKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLRKGAFTPEEEDRIIDLHSRIGNKWARMAAEFEVMIKSSPGSGMLPGRTDNEIKNFWNTRVKRMQRADLPIYPPHIYLRALSDNQESLDVGTVKNESGQHDDPSQTDNFDIPDLEFKNYKIHQGLSYAPAIFDIPESNMFEQPSVSSRSYNAMSPMHPRKRFREADVLYDSSFDGYISSAVPLFDQHDYYTSEKVSDHPRFSSPCDLILDTGQFHCYNFPGSHATRNGNTSSSTSITGAMKSELPSLQYLEDQQGVWGMPTSPLPSLESVDTLIQSPPTDPARSDPLSPRSSGLLDAIIWESKNLKGSNSNSLKQTAGNCISNEAIKSSTLNPRMTECDEQWELDSPLGQSAASVLTD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0486 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 84 IPR017930 -
Lal12g0486 441 MobiDBLite consensus disorder prediction 350 364 - -
Lal12g0486 441 ProSiteProfiles Myb-like domain profile. 81 144 IPR001005 -
Lal12g0486 441 SUPERFAMILY Homeodomain-like 32 140 IPR009057 -
Lal12g0486 441 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Lal12g0486 441 CDD SANT 35 80 IPR001005 -
Lal12g0486 441 Pfam Myb-like DNA-binding domain 36 96 - -
Lal12g0486 441 MobiDBLite consensus disorder prediction 1 26 - -
Lal12g0486 441 CDD SANT 88 142 IPR001005 -
Lal12g0486 441 MobiDBLite consensus disorder prediction 350 373 - -
Lal12g0486 441 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 440 - -
Lal12g0486 441 Gene3D - 32 85 - -
Lal12g0486 441 Gene3D - 88 147 - -
Lal12g0486 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 148 IPR017930 -
Lal12g0486 441 SMART sant 85 146 IPR001005 -
Lal12g0486 441 SMART sant 32 82 IPR001005 -
Lal12g0486 441 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0486 Lal-Chr12 3476721 3481215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0486 31 420 MYB Transcription Factor Family AT5G06100 40.786 1.59e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0486 Myb_DNA-bind_6 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0486 K09422 - gmx:100800658 522.316