Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0478 ATGTTTCAGGATTCCACCACCATGCTAACGCGGTGGTCTACTCAGCCAAGTCGGTGGACTCACCATCAGGACAAGCTATTCGAGCGAGCTCTGGTGGTCGTGCCGGAGTACGCGCCGGAGCGGTGGGATAAGATTGCGGAGAAGGTTCCAGGTAAGTCGGCGGCGGAAGTTAAGGAGCACTATGATGATTTGGTTCACGATGTGTTTGAGATCGATTCGGGTCGGGTGGCGGTGCCGGAGTACACGGATGAATCATCGTCGGTGTCGTTTGGTGAAAATGGAGGGTTGTCGTCGTGGGACTCTTCTAATCAGATATCGTTTATGTCAAAACGTAAACATGGTGACAACGAGAGGAAGAAAGGAACGCCATGGACAGAAGAGGAACACAGGCAATTTCTCGTTGGGCTAAGTAAGTTTGGCAAGGGAGATTGGAGAAGCATTTCAAGAAATCTTGTTGTGACAAGAACTCCCACTCAAGTTGCTAGCCATGCCCAAAAATACTTCCTTCGTCAAAATTCAGTGAAGAAGGAGAGAAAAAGATCAAGTATCCATGACATAACCACGGTGGACAGTAACTCTGTGTCTGCACCGATGGATCAGAACCGGGTTCCTCCTCCGGTTGGTCTAATGCAGCAGTCACAAGAAATACTGTATAACCCAATAAACATTTTGAATGATCAAATGGGTGGGTTTGGGTATTGA 702 0.4815 MFQDSTTMLTRWSTQPSRWTHHQDKLFERALVVVPEYAPERWDKIAEKVPGKSAAEVKEHYDDLVHDVFEIDSGRVAVPEYTDESSSVSFGENGGLSSWDSSNQISFMSKRKHGDNERKKGTPWTEEEHRQFLVGLSKFGKGDWRSISRNLVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVSAPMDQNRVPPPVGLMQQSQEILYNPINILNDQMGGFGY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0478 233 ProSiteProfiles Myb-like domain profile. 11 65 IPR001005 -
Lal12g0478 233 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Lal12g0478 233 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 226 IPR043363 -
Lal12g0478 233 SMART sant 120 170 IPR001005 -
Lal12g0478 233 SMART sant 15 67 IPR001005 -
Lal12g0478 233 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 171 IPR006447 GO:0003677
Lal12g0478 233 CDD SANT 123 168 IPR001005 -
Lal12g0478 233 Gene3D - 122 174 - -
Lal12g0478 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 172 IPR017930 -
Lal12g0478 233 ProSiteProfiles SANT domain profile. 119 172 IPR017884 -
Lal12g0478 233 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 14 226 - -
Lal12g0478 233 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Lal12g0478 233 CDD SANT 18 61 IPR001005 -
Lal12g0478 233 Gene3D - 12 78 - -
Lal12g0478 233 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Lal12g0478 233 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Lal12g0478 233 Pfam Myb-like DNA-binding domain 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0478 Lal-Chr12 3437075 3439368 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0478 Myb_DNA-binding 9.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0478 - - gmx:547481 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0478 12 3437075 3439368 Lal13g0474 13 3079528 3081754 LSH
Lal12g0478 12 3437075 3439368 Lal24g0385 24 2791822 2794547 LSH