Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0475 ATGGGAAAGAAATCTTTGAAGCTTCCATCTCTTTTCAAAACCAAAGAAGCGCCACACAAAAAGCAGCATCATCCATGGCAGTTCTTACCCTCTTGTAGCCACTCAAAGACCCTCTCATTTCGTGCTGGTGATGACATCTTCAAGACAGTTAACTCAGTATTCTTTGACCCTTCTTCAGAAACCACCATTGAAACTCCAGAGTCATGGTTCACAACCTCATCTGAATCTGCAAGTTTCTCAACAGAGTCAGAAGAGTATTGTCACTATGATGGTGAGTCTTTGGAGATGTTGGTACGTGGGGTTAGATCAGAGAGGCTGTTTTTTGAACCAGGTGACACAAGCTCTATCTTAGAAAAAGCTAAAGTTATTGGTTTTCCATTCAAAGAAAGTGTTGTGCTAGCTATAGAGTCAGATGACCCATATGAAGATTTTAAAAGATCAATGGTGGAAATGGTTGAGTCTCATCGAGTTAAAAGTTGGGAAGGTTTGGAAGAACTTTTGAGTTGGTACTTGAGGGTGAATGGTAAGAATAATCATGGGTTTATAGTTGGTGCTTTTGTGGATTTACTTATTAGTATGGCAGCTTCTAATTCTTGTTCTGAGTCAACTATTTATTCTTCTGCTCTTTCTTCATTTTCTTCTTCTTCTCCTTTGTGTTTATCTCAGAGCCAGACTGAGATTATTGAACTTGAGCCTGAAGAAGACACTGTAACATCTTAG 720 0.3917 MGKKSLKLPSLFKTKEAPHKKQHHPWQFLPSCSHSKTLSFRAGDDIFKTVNSVFFDPSSETTIETPESWFTTSSESASFSTESEEYCHYDGESLEMLVRGVRSERLFFEPGDTSSILEKAKVIGFPFKESVVLAIESDDPYEDFKRSMVEMVESHRVKSWEGLEELLSWYLRVNGKNNHGFIVGAFVDLLISMAASNSCSESTIYSSALSSFSSSSPLCLSQSQTEIIELEPEEDTVTS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0475 239 PANTHER TRANSCRIPTION REPRESSOR OFP13 6 217 - -
Lal12g0475 239 Pfam Transcriptional repressor, ovate 137 193 IPR006458 -
Lal12g0475 239 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 131 193 IPR006458 -
Lal12g0475 239 ProSiteProfiles OVATE domain profile. 133 192 IPR006458 -
Lal12g0475 239 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 6 217 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0475 Lal-Chr12 3403456 3404175 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal12g0475 Ovate 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0475 - - gmx:100527123 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0183 20 1279042 1279740 Lal12g0475 12 3403456 3404175 ECH
Lal11g1259 11 16268751 16269464 Lal12g0475 12 3403456 3404175 ECH
Lal13g1355 13 12772546 12773304 Lal12g0475 12 3403456 3404175 ECH
Lal12g0475 12 3403456 3404175 Lal12g0475 12 3403456 3404175 ECH
Lal12g0475 12 3403456 3404175 Lal24g0381 24 2752942 2753667 LSH