Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0464 ATGAAGGTTTTTGTCAAGACGTTGAAAGGCACTCACTTCGAAATCGAAGTCAAGCCCGAAGACACGGTTTCTGTAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTTTATCCTGCTGCACAACAAATGCTTATTCATCAAGGGAAAGTTCTGAAGGATGCTACAACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAGGAGTACATCTGGTGAAGGATCTGCTACTTCAACTGCGCCTTCAGTGAAGCCCCCACAAACAAGTGCAGCTCCTACTGCAACCCCCACAGTGTCAGTGTCAGTAGCAGCTCATGCTCCTGCTGCAACTGTAGCACCACCTGCACCTGCACCTGCTCTTGCTCTTGCTCTTGCTCCTGCTCCTTCGCCTGCTCTTGCTCCTGCTCCTTCCCCTGCTCTTGCTCCTGCTCCTTCCCCTGCTCTTGCTCCTGCTCCTGCTCCTTCGCCTGTTCCTGCTCCTATACCTTCAAGCACTGCTGTGGAAGGGTCTGATGTCTATGGCCAGGCAGCATCAAATTTGGTTGCTGGAATCAACTTAGAGGAAATTATTCAGCAAATCCTTGATATGGGTGGTGGGAGTTGGGATAGGGATACTGTTGTCCGGGCTCTTCGAGCTGCTTATAACAACCCCGAGAGAGCTGTTGAATATCTGTATTCAGGTATCCCTGAGCAAGCTGAAGCACCCGTTATTGGCCGAGTGCCCGCAAATGCGCAACCTGCTATTCCTACAACTCTCGATCCACAAGCTGCACAACCAGCTCCTGTTACCTCAGGCGGGCCTAATTCTCTACCTTTAGACCTCTTTCCCCAGGGCCTCCCCAATGCTGGTTCTGGTGCTGTTGGTGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAAGCTAATCCACAAATATTGCAGCCCATGCTACAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGACTTCCTCCGTCTGATAAATGAACCCGTGGAAGGTGGCGAAGGGAATTTATTGGGGCAACTGGCTTCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACTGTGTTGGAGGTTTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAACAATAA 1287 0.4802 MKVFVKTLKGTHFEIEVKPEDTVSVVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSRSTSGEGSATSTAPSVKPPQTSAAPTATPTVSVSVAAHAPAATVAPPAPAPALALALAPAPSPALAPAPSPALAPAPSPALAPAPAPSPVPAPIPSSTAVEGSDVYGQAASNLVAGINLEEIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPVIGRVPANAQPAIPTTLDPQAAQPAPVTSGGPNSLPLDLFPQGLPNAGSGAVGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLLGQLASGMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0464 428 SUPERFAMILY UBA-like 364 426 IPR009060 GO:0005515
Lal12g0464 428 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lal12g0464 428 MobiDBLite consensus disorder prediction 79 104 - -
Lal12g0464 428 Gene3D - 189 239 - -
Lal12g0464 428 CDD UBA1_Rad23_plant 190 239 - -
Lal12g0464 428 Pfam UBA/TS-N domain 196 234 IPR015940 -
Lal12g0464 428 Pfam UBA/TS-N domain 383 418 IPR015940 -
Lal12g0464 428 Gene3D - 1 77 - -
Lal12g0464 428 SUPERFAMILY UBA-like 195 248 IPR009060 GO:0005515
Lal12g0464 428 SUPERFAMILY XPC-binding domain 299 364 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal12g0464 428 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lal12g0464 428 MobiDBLite consensus disorder prediction 143 177 - -
Lal12g0464 428 PANTHER UV EXCISION REPAIR PROTEIN RAD23 139 427 - -
Lal12g0464 428 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 145 - -
Lal12g0464 428 TIGRFAM rad23: UV excision repair protein Rad23 133 426 IPR004806 GO:0006289
Lal12g0464 428 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 380 421 IPR015940 -
Lal12g0464 428 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 197 237 IPR015940 -
Lal12g0464 428 Pfam XPC-binding domain 302 357 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lal12g0464 428 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 145 - -
Lal12g0464 428 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 139 427 - -
Lal12g0464 428 MobiDBLite consensus disorder prediction 143 171 - -
Lal12g0464 428 SMART ubq_7 1 75 IPR000626 GO:0005515
Lal12g0464 428 Gene3D - 292 358 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal12g0464 428 SMART CBM 300 343 IPR006636 -
Lal12g0464 428 Gene3D - 375 422 - -
Lal12g0464 428 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lal12g0464 428 PRINTS DNA repair protein Rad23 signature 328 350 IPR004806 GO:0006289
Lal12g0464 428 PRINTS DNA repair protein Rad23 signature 377 393 IPR004806 GO:0006289
Lal12g0464 428 PRINTS DNA repair protein Rad23 signature 394 408 IPR004806 GO:0006289
Lal12g0464 428 PRINTS DNA repair protein Rad23 signature 409 424 IPR004806 GO:0006289
Lal12g0464 428 SMART uba_6 196 236 IPR015940 -
Lal12g0464 428 SMART uba_6 383 420 IPR015940 -
Lal12g0464 428 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0464 Lal-Chr12 3314770 3319629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0464 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 3.25e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0464 K10839 - gmx:100809066 588.571