LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal12g0464	ATGAAGGTTTTTGTCAAGACGTTGAAAGGCACTCACTTCGAAATCGAAGTCAAGCCCGAAGACACGGTTTCTGTAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTTTATCCTGCTGCACAACAAATGCTTATTCATCAAGGGAAAGTTCTGAAGGATGCTACAACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAGGAGTACATCTGGTGAAGGATCTGCTACTTCAACTGCGCCTTCAGTGAAGCCCCCACAAACAAGTGCAGCTCCTACTGCAACCCCCACAGTGTCAGTGTCAGTAGCAGCTCATGCTCCTGCTGCAACTGTAGCACCACCTGCACCTGCACCTGCTCTTGCTCTTGCTCTTGCTCCTGCTCCTTCGCCTGCTCTTGCTCCTGCTCCTTCCCCTGCTCTTGCTCCTGCTCCTTCCCCTGCTCTTGCTCCTGCTCCTGCTCCTTCGCCTGTTCCTGCTCCTATACCTTCAAGCACTGCTGTGGAAGGGTCTGATGTCTATGGCCAGGCAGCATCAAATTTGGTTGCTGGAATCAACTTAGAGGAAATTATTCAGCAAATCCTTGATATGGGTGGTGGGAGTTGGGATAGGGATACTGTTGTCCGGGCTCTTCGAGCTGCTTATAACAACCCCGAGAGAGCTGTTGAATATCTGTATTCAGGTATCCCTGAGCAAGCTGAAGCACCCGTTATTGGCCGAGTGCCCGCAAATGCGCAACCTGCTATTCCTACAACTCTCGATCCACAAGCTGCACAACCAGCTCCTGTTACCTCAGGCGGGCCTAATTCTCTACCTTTAGACCTCTTTCCCCAGGGCCTCCCCAATGCTGGTTCTGGTGCTGTTGGTGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAAGCTAATCCACAAATATTGCAGCCCATGCTACAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGACTTCCTCCGTCTGATAAATGAACCCGTGGAAGGTGGCGAAGGGAATTTATTGGGGCAACTGGCTTCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACTGTGTTGGAGGTTTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAACAATAA	1287	0.4802	MKVFVKTLKGTHFEIEVKPEDTVSVVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSRSTSGEGSATSTAPSVKPPQTSAAPTATPTVSVSVAAHAPAATVAPPAPAPALALALAPAPSPALAPAPSPALAPAPSPALAPAPAPSPVPAPIPSSTAVEGSDVYGQAASNLVAGINLEEIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPVIGRVPANAQPAIPTTLDPQAAQPAPVTSGGPNSLPLDLFPQGLPNAGSGAVGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLLGQLASGMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ	428

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal12g0464	428	SUPERFAMILY	UBA-like	364	426	IPR009060	GO:0005515
	Lal12g0464	428	ProSiteProfiles	Ubiquitin domain profile.	1	79	IPR000626	GO:0005515
	Lal12g0464	428	MobiDBLite	consensus disorder prediction	79	104	-	-
	Lal12g0464	428	Gene3D	-	189	239	-	-
	Lal12g0464	428	CDD	UBA1_Rad23_plant	190	239	-	-
	Lal12g0464	428	Pfam	UBA/TS-N domain	196	234	IPR015940	-
	Lal12g0464	428	Pfam	UBA/TS-N domain	383	418	IPR015940	-
	Lal12g0464	428	Gene3D	-	1	77	-	-
	Lal12g0464	428	SUPERFAMILY	UBA-like	195	248	IPR009060	GO:0005515
	Lal12g0464	428	SUPERFAMILY	XPC-binding domain	299	364	IPR036353	GO:0003684\|GO:0006289\|GO:0043161

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal12g0464	Lal-Chr12	3314770	3319629	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal12g0464	1	74	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	37.838	3.25e-08	50.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal12g0464	K10839		-	gmx:100809066	588.571

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