Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0462 ATGCCTGAGCATCGTAAACAACCATCAAAGAGACAGAATCAAAGGGCTAAGCAACCCTTTCCAGATCCCAAGATAATGAGAAAACTTCGCATCATTTACAATGATCCTGATGCTACTGACTCATCTGATGATGAACCAGAGCCAAGAAAAATCAAAAGAACCATCCATGAGATACCACTTCCCCTTCTTTCTGTCACCAACTCTATCACCACCTTTACTGAAACAACAAGCTCTTGTGATGAAACATTTAACAAGAATGTTTGTGTTTTGAACAAAACTTGCATGGAAAGTCAAAAACCCCAAAAAAATAGGAAGAGGGTTTTTACACAAAACACTTCAAGTAAGAAACTACCTTGTGGAAAGTATAGAGGAGTTAGGCAAAGAAAATGGGGTAAATGGGCTGCAGAAATTCGTGACCCGTTTAGGTCTACCCGTCTCTGGTTAGGTACTTACAACACTGCTGAAGAGGCTTCACGAGCCTATGAGAACAAAAGGCTTGAATTTGATGCCATGGCAAAGGCTCAATCTTGCAGCAAAGATTGTTATTCTACTGCTTCTTCTGTTGTAGTACCTAAGACTACTACTATTACAACTTCTGATAAGTGTAACAAGCCCGTGCCTTTATTACACAAGTCTTCTAGTTCTACTACTTTGGTGGAATCTGAGAGCATAGTGTCACACACATCACCTTCTTCTGTGCTTGAATTGGATACTTTGGCTTCTAATTGGATTGAAAGGGGTAATCTTTCATGCAATGAAGCTACCGAGACTTGTGATTTGGTGGTTGAGTTAGCTGAGTTGGAGATACCAGATTTGAGCACTTGGAACTTGCCTCCAACATCTAATATTGGTGCTTCTATGTCTGAGCCAAACCTTGAGTTTGATCTTGATTTTGATTTGTTGCCATTTGATGATTTTGCAAAGGGCATTGGTGATCTTGGTGGCCTAGAGGATATCAATATCTTCGGATTTGATGATGATGATGGTCCTAGTGAGCTTCCCGATTTCGATTTCGGTGATTTTGTTGGGGATGAGTTTGCTAGTTGGATTGAGGAACCACTGAATGTAACTTGCGCCTAA 1080 0.4056 MPEHRKQPSKRQNQRAKQPFPDPKIMRKLRIIYNDPDATDSSDDEPEPRKIKRTIHEIPLPLLSVTNSITTFTETTSSCDETFNKNVCVLNKTCMESQKPQKNRKRVFTQNTSSKKLPCGKYRGVRQRKWGKWAAEIRDPFRSTRLWLGTYNTAEEASRAYENKRLEFDAMAKAQSCSKDCYSTASSVVVPKTTTITTSDKCNKPVPLLHKSSSSTTLVESESIVSHTSPSSVLELDTLASNWIERGNLSCNEATETCDLVVELAELEIPDLSTWNLPPTSNIGASMSEPNLEFDLDFDLLPFDDFAKGIGDLGGLEDINIFGFDDDDGPSELPDFDFGDFVGDEFASWIEEPLNVTCA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0462 359 CDD AP2 121 161 IPR001471 GO:0003700|GO:0006355
Lal12g0462 359 SUPERFAMILY DNA-binding domain 121 168 IPR016177 GO:0003677
Lal12g0462 359 SMART rav1_2 121 175 IPR001471 GO:0003700|GO:0006355
Lal12g0462 359 Pfam AP2 domain 121 169 IPR001471 GO:0003700|GO:0006355
Lal12g0462 359 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 359 - -
Lal12g0462 359 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 359 - -
Lal12g0462 359 Gene3D AP2/ERF domain 120 175 IPR036955 GO:0003700|GO:0006355
Lal12g0462 359 MobiDBLite consensus disorder prediction 1 49 - -
Lal12g0462 359 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Lal12g0462 359 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Lal12g0462 359 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0462 Lal-Chr12 3300756 3301835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0462 26 358 AP2-EREBP Transcription Factor Family AT1G68550 32.948 1.92e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal12g0462 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0462 - - lang:109336607 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0462 12 3300756 3301835 Lal24g0371 24 2685289 2687084 LSH