Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0454 ATGTCTATAAGCACAAAGAGAGAGTTAGGTTCTAATGAAGAAGAGAGTGAGTTGAGAAGAGGGCCTTGGACCCTTGAAGAAGATAGTTTACTTATACACTATATTACTTGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGAGTGGAAAAAGCTGCAGGCTTAGATGGCTAAATTACTTGAAACCTGACATTAAGAGAGGGAATCTTAGTCCACAAGAACAACTCTTGATCCTTGAACTCCACTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAACATCTGCCCGGAAGAACCGATAATGAGATCAAAAACTATTGGAGAACAAGGGTACAAAAACAGGCACGCCAACTTAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCAGTGAAATGCTTTTGGATGCCTAGATTGCTTCAAAAGATGGAACAAGACTCATTCCTCAGCTCTTACTCTTCCATGACAAACATGAATTTTGGTAACTCAGCAGAAGCTTCAACCAGTTCAATGTCAAACACCTCCAATTTTCCTTATCTTCCTTCATCAACTCCTCCACAAGAGCTATTTATTGATGCTGCAAATGCTAATAATTTAAGTACCATGTCCAGTCACACCAATGCTTTCTCAAACTTGGATTCCTTGCAATTTTCACAGCTACTTGAAATTTCAGAACAACCAACATGTCCTCCTAATGTGTTTGAGAACAATGTTTATAACAATCCAATCCAAGATAATTGGTTTGTTGATACCAACAACTATGGCATGCAAGGTCTGAACATGGATCCCCTTCAAGTAATGGAAAGTTATGATATTCCACAGTTTGCTTTTCAGGCTGAAGGAAATGATGAGTGGATGTTAGACAACATGGGTGATACTTTATGGAACATGAATACTATGTAA 924 0.3907 MSISTKRELGSNEEESELRRGPWTLEEDSLLIHYITCHGEGRWNMLAKSAGLKRSGKSCRLRWLNYLKPDIKRGNLSPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQDSFLSSYSSMTNMNFGNSAEASTSSMSNTSNFPYLPSSTPPQELFIDAANANNLSTMSSHTNAFSNLDSLQFSQLLEISEQPTCPPNVFENNVYNNPIQDNWFVDTNNYGMQGLNMDPLQVMESYDIPQFAFQAEGNDEWMLDNMGDTLWNMNTM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0454 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Lal12g0454 307 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lal12g0454 307 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lal12g0454 307 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Lal12g0454 307 SMART sant 72 120 IPR001005 -
Lal12g0454 307 SMART sant 19 69 IPR001005 -
Lal12g0454 307 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g0454 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 306 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal12g0454 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Lal12g0454 307 CDD SANT 77 116 IPR001005 -
Lal12g0454 307 Gene3D - 17 73 - -
Lal12g0454 307 Gene3D - 77 118 - -
Lal12g0454 307 CDD SANT 22 67 IPR001005 -
Lal12g0454 307 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 306 - -
Lal12g0454 307 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Lal12g0454 307 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0454 Lal-Chr12 3198113 3199789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0454 15 154 MYB Transcription Factor Family AT1G68320 82.143 1.01e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0454 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0454 K09422 - gmx:100780759 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0454 12 3198113 3199789 Lal24g0360 24 2561943 2563591 LSH