Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0449 ATGGAGGACCCACATCTTGAGTTCCATACTAAAACCAGAAACTACACTTCCCTGAAACTCTTCGGGTTCAACGTAGAAAAAGAAAGCTTTGAAGACAAGGTGCTCCATAAAGATGAAGCAACAGATTCAACAACTCAAAATACCACTTCAACTTCAATTACCTCTCCTCCTTCTTCCTCCTCAGGAGATCGGAAATACGAGTGCCACTACTGTTTCAGAGAGTTTGCAAATTCACAAGCACTTGGTGGCCACCAAAACGCTCACCGGAAAGAGCGTCAACAACTCAAGCGTGCCCAGTTACAAGCCACTCGAAACGCAGCCGTTTCGTACATCCGTAACCCCATCATCTCCGCCTTCACCCCTCCGCCCCACCTCTTCACTCCGCTTCCGCCGGAAATGCCGTCATGGGTGTACGTGTCGCCACGTGCCGTGCCACACGGTTGTGTGTTCTCGTCGGCGCAAAACAAAACCATGAGAAATAATAGTAGTAGCCGTAATTATAGTGGGTGTTGTAATAATAGAGCAAAATATGCGGGTACAGAGTTTTTCCCCTATGTCAGCGCTGTAGTGGATCCCTCATCCGTAACGATGGGGTCGCAGGTACAAGCCCGGGCCCACCACGGTAGAATTGATGTTGATGGGCCCAATTTCGATGACGCATTGGGCTTGAATCTACACCTTAGCCTTGCTCCTGCTGCGCCGTGA 705 0.4965 MEDPHLEFHTKTRNYTSLKLFGFNVEKESFEDKVLHKDEATDSTTQNTTSTSITSPPSSSSGDRKYECHYCFREFANSQALGGHQNAHRKERQQLKRAQLQATRNAAVSYIRNPIISAFTPPPHLFTPLPPEMPSWVYVSPRAVPHGCVFSSAQNKTMRNNSSSRNYSGCCNNRAKYAGTEFFPYVSAVVDPSSVTMGSQVQARAHHGRIDVDGPNFDDALGLNLHLSLAPAAP 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0449 234 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lal12g0449 234 MobiDBLite consensus disorder prediction 36 63 - -
Lal12g0449 234 PANTHER ZINC FINGER PROTEIN 5 10 234 IPR044299 GO:0010090
Lal12g0449 234 PANTHER ZINC FINGER PROTEIN GIS3 10 234 - -
Lal12g0449 234 MobiDBLite consensus disorder prediction 41 62 - -
Lal12g0449 234 Gene3D Classic Zinc Finger 38 113 - -
Lal12g0449 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Lal12g0449 234 SUPERFAMILY beta-beta-alpha zinc fingers 62 93 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0449 Lal-Chr12 3163574 3164278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0449 1 233 C2H2 Transcription Factor Family AT1G68360 40.149 3.08e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0449 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0449 - - lang:109346352 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0449 12 3163574 3164278 Lal13g0442 13 2801316 2802104 LSH