Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0448 ATGGGTTCAAAAATTGAAGGACCATCTACCCCAGCAAATCGACGTGACCCTTATGAGGTTTTGTCTGTAACAAGAGACTCTACCGATCAAGAAATCAAATCTGCTTACAGAAAGCTAGCTCTCAAGTATCACCCTGACAAGAATGCCAGCAATCCTGAAGCTTCGGAACTATTTAAGGAGGTTGCATATTCTTATAGCATCTTGTCTGACCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAACATGGACATGGAAATTGACTTATCTAATCTCGGGACTGTCAACACAGTGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATAAAGACTACGGTTTCAGCCAATGTACTTGAAGAAGCTCTTAATGGCACTGTTACAGTCAGACCCCTCCCTATTGGAACATCAGTTAGCGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTCGGTGTGACAATAAATGAGCAGCAAGCTCAGTCAGGGATTGTAATAAGAGCTACTTCAACCGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACAAGATGCAAATGGTGGTTATGGTTTGGCGTTACAGGAAGATAGCGAGAAAACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAACTAAAGCCTGGCACTCATATCTTTGCTGTTTATGGGGATAACTTCTTCAAGACTGCTAGCTATACAATTGAGGCAGTATGTGCAAAGTCACATGAAGACACCACCCAAAAGCTTATGGACACTGAGGCTCAAATTTTAAGAAAGAGGAATGAACTACGCCAATTTGAAGCAGAATATAGAAATGCACTGGCGCGCTATCAGGAAGTGACAGATAGATACACAAAAGAAAAACAGTCTGTAGATGAACTTCTGAAACAAAGGGATAGTATTCATTCTTCCTTCACTGTTGTCAAGTCAACCACTATTAGTGGGAGTTCTAGTATTTTAGGCAATGGAAGTTCTAGCAAAATTTCTGGTGACGGGAGCCCCGAGGATGGAGGGTCAGATGGAAAGGATAAATCTGGCAAAAAGAAATGGTTTAACCTCAATCTTAAGGGTTCTGATAAGAGTCTGATTTAA 1224 0.4167 MGSKIEGPSTPANRRDPYEVLSVTRDSTDQEIKSAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADNMDMEIDLSNLGTVNTVFAALFSKLGVPIKTTVSANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAQSGIVIRATSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLMDTEAQILRKRNELRQFEAEYRNALARYQEVTDRYTKEKQSVDELLKQRDSIHSSFTVVKSTTISGSSSILGNGSSSKISGDGSPEDGGSDGKDKSGKKKWFNLNLKGSDKSLI 407
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0448 407 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g0448 407 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 2 404 - -
Lal12g0448 407 PRINTS DnaJ domain signature 18 36 IPR001623 -
Lal12g0448 407 PRINTS DnaJ domain signature 36 51 IPR001623 -
Lal12g0448 407 PRINTS DnaJ domain signature 53 73 IPR001623 -
Lal12g0448 407 PRINTS DnaJ domain signature 73 92 IPR001623 -
Lal12g0448 407 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 2 404 - -
Lal12g0448 407 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Lal12g0448 407 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Lal12g0448 407 CDD DnaJ 16 70 IPR001623 -
Lal12g0448 407 MobiDBLite consensus disorder prediction 358 393 - -
Lal12g0448 407 SMART dnaj_3 15 73 IPR001623 -
Lal12g0448 407 MobiDBLite consensus disorder prediction 358 376 - -
Lal12g0448 407 Coils Coil 286 341 - -
Lal12g0448 407 Pfam DnaJ domain 16 78 IPR001623 -
Lal12g0448 407 SUPERFAMILY Chaperone J-domain 12 86 IPR036869 -
Lal12g0448 407 Gene3D DnaJ domain 3 98 IPR036869 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal12g0448 Lal-Chr12 3154364 3161015 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0448 9 89 C2H2 Transcription Factor Family AT1G74250 41.860 2.97e-13 69.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0448 - - lang:109336585 719.924
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0448 12 3154364 3161015 Lal13g0441 13 2788306 2794532 LSH
Lal12g0448 12 3154364 3161015 Lal24g0356 24 2522666 2528353 LSH