Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0444 ATGGCTTCAGTTTATGTATTCCACTTCCTTTTGTTTTCTCACCTTATGCTACTTCTCTTGGCTTCTGAAGATAGATATGGAAACCAAGTAAAGTGTCCACCTTCATTTCACTGTGGACATCTTGGCAATATCAGCTACCCTTTCACTGTAACACAAAGCCCTCACTGTGGCTTATTTGTCATAAGCAATTGTGATAATCGATTGAAGTCCAAAGATATCCAACTAGAGAATAATGGGAAATGGTTTTGGGTTATAGGTATTATTCACAATCCTCCTACTTCTCCTAATATTACTATTCAAATTAGAGACTACACTCTCAATAACCTGATGGAATCCAGAAGTTGTGAAGCCTTTAGCAATAATTATACTCTTCCAACCAAATTTCCTTTTGGTTCTATTCATATAGCTTATAGTCAAATCTTGTTGAAGTGCAATCGCTCCCTCCATGTCGAGCCTCCACAAAATGTGCATAAATATACAAACTGTTCTGACTATGATCTCTACTACAAGCCTTCGCTTAATCCAAATGATGAGTCTCTGAGTTCTTTGGTAGCATGTACTATGGTCAAACTTCCTATTAAAGATGTGGCTGATGCTGAAGACCCTTTTACGTTTATAACTTCTGATATGATCGCTGAAGTCCAATTATCATATGAATGTGCAAATTGCTACTATGTCAAAAGAGGGCAGTGTCACCTTGACAACTCACAGAAATTCTGTTGCATCAATGGTTACGAGAAAACTGGAATGAAGCTGCTGATAGTGGCAACAGCGGCTTCATTGGCTGGAGTGGCAGTGCTGATAATCTTGGCTTACCGGTTTCGGACAAAGATCTTCCTTCCTACATATCTTTTGTTTTGGAAGGGTAATCCAACCAATATCATTATTGAGAAGTTTTTGAAGGAACATGGAGATCTTCCTACAACTAGGTACAATTATGCAGAGGTGAAGAAAATGACCAACTCTTTCAGAAACAAATTAGGCCAAGGAGGATTTGGATGTGTATACAAAGGGAAGTTACAAGATGGCCGTGATGTTGCAGTGAAAGTTTTAACTGAATCAAAAGCTGATGGAGAGGATTTCATCAACGAAGTTGCAAGTATTAGTAGAACTTCACATGTTAACATTGTTAGACTTTTGGGGTTCTCTTTGAATGGTTCTAAAAGGGCACTAATATACGAATTTATGCCTAATGGTTCTCTTGAGAAGTTCATATACGAAGAGAAAAAACCTTCGAAGGTTGATCTCCAAATTGATTGTCAGAAATTATATGAAATTGCAATTGGCGTAGCTCGAGGATTAGAGTACTTGCATCGAGGCTGTAACACTAGAATTCTTCATTTTGATATAAAACCACATAACATACTGCTGGACAAGGATTTTTGTCCAAAAATTTCAGACTTTGGATTGGCTAAAATATATACAAGAAAAGAAAGTATTGTATCCATATTTGGTGCAAGGGGTACTGCAGGATATATTGCTCCGGAATTGTTTTCTAGAAATTTCGGCGGAGTGTCGCATAAATCAGATGTCTATAGTTATGGAATGATGGTGTTAGAAATGGTGGGTCAGAGAAAGAATATTAACGTAGCAGTTGATCGTTCTAGTGAGTTATACTTTCCACACTGGATTTATAAGCGTCTTGAGTTAAATGAGTTGGTTGAACTGCAGTGTATAAAGAATGAGAGTGATGAAGAAATGGACTCCCCACACTACATACAGAAGTCGGTTTGGAAGGTGACAACTTCAGTAAGAGAAGAAGTTGGTACAGGGAATACCGACTTCTGTGAAGGACTCCCCACACTGATACAGAAGTCGGTCTGGCTGGTGACAACTTCAGTGAGAGAAGAAGTTGGTACAGGGAATACCGACTTCTGTGAAGGACTCCCCACACTGCATACAGAAGTCAAGTCGATGGAAGAAGAAATGAACACGAATAATGAAACTCACTGTCAGGCAGAGGGTTTAGATGAATTTAATGGTAGTGAAGATGAAAATGTGAATGAAGTAGAGGAGTTAAATTTTGAAGAGATAAATTTTCAATTATTAAATGAAGATGATGTGAAGAAATATAGGTTTTTAAACAATGATATCGCTTACAAATTTTATAAGATGTATGGTATGAAGAAAGGATTTGGCATTAGAAAATATCATACTCGGCGAAACAAGGATGGTGAAATTATATGGCAATCATTTTTTTGTGATAGGGAAGGATTTAGAGATAAAAAAAATGAATTGGTTCGGAAGAGGGCGCCGAGAAAAGAGACTAGATGTGGTTGTTTAGCAAGAATGAAAATCCACATTGACAATGAAAAAGGAGATTGGTATGTTAGTTATTTTGTTGATGAACATAATCATGAATTGGTGGGTGAACATTACGGTGCAATGATAGCCTCTAACAGAAGAATGACAGAGACAGACGTGGCTCAGATGAACACAATGAGAGAAGTGGGGATTGGGACAGGAAAAATATTTGGTTCGTTTGCCGGTCAAAGTGGTGGATATCAGTATATTGGGTTCTCCAAGAAGGACATGTATAATCAAATTCAGAAGCAAAGACTAATAGGAAATGGTGACGCAGAATCAGCATTACAATACTTAAAGGACCAATCAAAATCAGATTGTGCAATGTATTGGAGACATACTGTAGATGAAGAAGGTAAGTTACAACAATTATTTTGGGCTGATGGATGCAGCATTTTCGACTACTCAATTTTTGGAGATGTTCTTGCTTTTGATGCAACTTATGGTCGAAACAAATACAAGTTCCCAGTTGTAATTTTTTCTGGTGTGAATCATCACAAGCAAACGACTGTGTTTGGCGCCGCTGTTGTGTCAAATGAGACAGAGGAAACATACATTTGGCTTTTGGAGAAATTTTTGGAGGCAATGATTGGGAAACAACCCAAGTGTGTTATCACTGATGGTGACTTGTCGATGAAGAATGCAATCAAAAGAGTTTTTCCCGAAGCACACCATAGACTATGTGCTTGGCATATATGTAACAATGCTGGGAAAAATATAAAGAAAAATAACTTTCATAAGGATTTCCAAAAAGTTATGTATGCTGATGTTGATATTGATGATTTTAATATGATGTGGGAAGAACTTATTGCTAAGCATGGACTTCATAACAATGCATGGGCCGCTCAGATTTTTGATTGCAGAAGTATGTGGGCGAGGTCTTACATTCGGGGAAAGTTCTATGCTGGTTTGCATACTACATCACGTTGTGAGGGATTACACTCACAAATGGGAAGGTATATAGAATCTGGGTATAACGTTACTGAATTTCTACATCACTTTCAACGATGTCTAAGTCACATGAGGAACAATGAGGTGATGGAAGATTTTAAATCTTCATATGGTGATGAGTTGTTACAAACTCCTTATCATAATTTAGAGGGTCATGCTGCTTCGATATATACTAGAGTTGTTTTCAAAGAATTTCGTGCAGTTTTATTGGAAGCAGCAAAATTAAGGATTATTTCTACCCAACAAACATCGACTCATGTAATATACAAGATTGGGAAGCATTACAGTCCGAACAAGAAATGGCATGTATCACATTATGACAATGGCAGTATCGTGGACATTAAATGCTCGTGTAAAAGAATGGAATCTTTTGGGATGCCATGTAGTCATAGTGTTTTTGTCTTACTAATTTTGGACATGTCACAATTGCCATCTTGTTTGGTTCTTGATAGATGGACAAAGAAAGCAAAGGATATTCAACGTCTCAATTTTCAGCAATGTGACCTAAGTAAAGAATCAGTTGAAAGTAGTAGATATGGAGCTTTGAGTGATGGTTGTAGGGTGTTATGTAATCTTGCTTGCAAAACGGAGGAAGACTTTACTGAGATGCTTGAAAAAGTTTATAACGAATGTAGTAGACTCCGATCAAAACAACACTCTAGTGCGATGGAAAATGTTGACAATGCAACTGGAGATCAAGTAAGAGACCCAGTTCGAGTACGTGGTAAAGGAAGAGTACCGGGGATTACCTCAAGGCCCAAGCGAGGTAATCATTGTGGTATATGTCGAGAAATTGGCCACAATAGGGCAAGTTGTCCAAATGTTGTTGGTAGTTGTAGTCGTACTTTTGATAATGATTTCGATGAAGAATGA 4128 0.3767 MASVYVFHFLLFSHLMLLLLASEDRYGNQVKCPPSFHCGHLGNISYPFTVTQSPHCGLFVISNCDNRLKSKDIQLENNGKWFWVIGIIHNPPTSPNITIQIRDYTLNNLMESRSCEAFSNNYTLPTKFPFGSIHIAYSQILLKCNRSLHVEPPQNVHKYTNCSDYDLYYKPSLNPNDESLSSLVACTMVKLPIKDVADAEDPFTFITSDMIAEVQLSYECANCYYVKRGQCHLDNSQKFCCINGYEKTGMKLLIVATAASLAGVAVLIILAYRFRTKIFLPTYLLFWKGNPTNIIIEKFLKEHGDLPTTRYNYAEVKKMTNSFRNKLGQGGFGCVYKGKLQDGRDVAVKVLTESKADGEDFINEVASISRTSHVNIVRLLGFSLNGSKRALIYEFMPNGSLEKFIYEEKKPSKVDLQIDCQKLYEIAIGVARGLEYLHRGCNTRILHFDIKPHNILLDKDFCPKISDFGLAKIYTRKESIVSIFGARGTAGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGQRKNINVAVDRSSELYFPHWIYKRLELNELVELQCIKNESDEEMDSPHYIQKSVWKVTTSVREEVGTGNTDFCEGLPTLIQKSVWLVTTSVREEVGTGNTDFCEGLPTLHTEVKSMEEEMNTNNETHCQAEGLDEFNGSEDENVNEVEELNFEEINFQLLNEDDVKKYRFLNNDIAYKFYKMYGMKKGFGIRKYHTRRNKDGEIIWQSFFCDREGFRDKKNELVRKRAPRKETRCGCLARMKIHIDNEKGDWYVSYFVDEHNHELVGEHYGAMIASNRRMTETDVAQMNTMREVGIGTGKIFGSFAGQSGGYQYIGFSKKDMYNQIQKQRLIGNGDAESALQYLKDQSKSDCAMYWRHTVDEEGKLQQLFWADGCSIFDYSIFGDVLAFDATYGRNKYKFPVVIFSGVNHHKQTTVFGAAVVSNETEETYIWLLEKFLEAMIGKQPKCVITDGDLSMKNAIKRVFPEAHHRLCAWHICNNAGKNIKKNNFHKDFQKVMYADVDIDDFNMMWEELIAKHGLHNNAWAAQIFDCRSMWARSYIRGKFYAGLHTTSRCEGLHSQMGRYIESGYNVTEFLHHFQRCLSHMRNNEVMEDFKSSYGDELLQTPYHNLEGHAASIYTRVVFKEFRAVLLEAAKLRIISTQQTSTHVIYKIGKHYSPNKKWHVSHYDNGSIVDIKCSCKRMESFGMPCSHSVFVLLILDMSQLPSCLVLDRWTKKAKDIQRLNFQQCDLSKESVESSRYGALSDGCRVLCNLACKTEEDFTEMLEKVYNECSRLRSKQHSSAMENVDNATGDQVRDPVRVRGKGRVPGITSRPKRGNHCGICREIGHNRASCPNVVGSCSRTFDNDFDEE 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0444 1375 Gene3D Phosphorylase Kinase; domain 1 299 395 - -
Lal12g0444 1375 Pfam FAR1 DNA-binding domain 701 789 IPR004330 -
Lal12g0444 1375 Gene3D Transferase(Phosphotransferase) domain 1 396 588 - -
Lal12g0444 1375 Pfam SWIM zinc finger 1194 1221 IPR007527 GO:0008270
Lal12g0444 1375 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 567 IPR045874 GO:0004672
Lal12g0444 1375 ProSiteProfiles Protein kinase domain profile. 321 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0444 1375 SUPERFAMILY Protein kinase-like (PK-like) 307 544 IPR011009 -
Lal12g0444 1375 Pfam MULE transposase domain 909 1003 IPR018289 -
Lal12g0444 1375 ProSiteProfiles Zinc finger SWIM-type profile. 1186 1224 IPR007527 GO:0008270
Lal12g0444 1375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Lal12g0444 1375 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Lal12g0444 1375 SMART serkin_6 321 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0444 1375 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 567 - -
Lal12g0444 1375 Pfam Protein kinase domain 325 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0444 Lal-Chr12 3126451 3132592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0444 310 556 Receptor kinase-like Gene Family AT4G18250 61.355 7.43e-97 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lal12g0444 Pkinase 4.7e-43 CL0016
TF FAR1 Lal12g0444 Pkinase 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0444 - - gmx:100783861 676.011