Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0435 ATGGGTTCTTTTCAAGATCGTAACATCATACTCACATCTCATGTTGCTAAAAATGAGGCTCCACTACTTGATTCTGGACATGCCCGACTTAACCAACTTGGTTACAAACAAGAGTTAAAGCGTGATCTATCGGTCCTTTCAAATTTTGCGTTTTCATTTTCTATCATATCAGTGCTGACTGGTATCACTACCCTGTATAACACTGGGTTGAACTATGGTGGCCCTGTCTCAATGGTATATGGGTGGCTTGTAGCTTGTTTTTTCACAATGGTTGTTGCACTCTCAATGGCTGAGATTTGTTCATCTTATCCAACTTCTGGTGGTCTTTATTATTGGAGTGCCAAGCTTGCTGGACCTAGTTGGGCACCCTTTGCATCCTGGATTACTGGCTGGTTCAATATTGTTGGCCAGTGGGCAGTGACAACAAGTGTAGATTATTCACTTGCACAACTAGTCCAGGTTATCATTCTCCTTAGTACTGGTGGAAAAAATGGGGGTGGATATGTGGCATCTAAATATGTAGTTATTGCTTTACATGGGGGAATTTTGGTCCTACATGGTATATTGAACAGCCTTCCTATCTCATTGTTATCATTCTTAGGACAATTGGGAGCTGCATGGAATTTTTTAGGTGTTTTTCTTATGATTCTAATTCCATCTGTTGCAACGGAAAGAGCTAGTGCCAGTTTTGTTTTCACTAATTTTAATACTGACAATGGAGCTGGAATCAGCAGCAGACCTTACATATTTCTCATAGGACTTTTAATGAGTCAGTATACCCTAACTGGGTATGATTCATCAGCACATATGACAGAGGAAACCAAGGATGCTGATATAAATGGACCAAGAGGAATTATTAGTGCTGTTGGGATATCAGTTATTGTTGGATGGGGTTACATAATAGGCATTAGTTTTGCAGTTACTGACATCCCTTACCTTTTGAGTGAAAATAATGATGCTGGAGGGTATGCAATAGCTGAAGTATTTTATCTGGTATTCAAGAGAAGATATGGCAATGGAGTTGGGGGTATTATTTGCTTGGTAATTGTTGCTGTTGCCATATTTTTCAGTGGTATGAGTTCAATTACCAGTAATTCAAGGATGGCTTATGCTTTCTCCAGAGATGGGGCCATGCCATTATCATCATTGTGGCATAAAGTTAACAAGCAAGAGGTCCCCATAAATGCAGTTTGGCTTTCCGTCATTATATCATTTTGCATGGCCCTCACGTCTCTTGGAAGCATAGTAGCATTTGATGCCATGGTGTCCATAGCAACGATCGGCCTCTATATTGCTTATGCCTTACCTATCTTCTTTAGAGTGACCTTGGCACAAAAACGTTTCGTTCAAGGACCATTCAACTTGGGTCGTTACGGCATCATTGTTGGCTGGATTGCAGTTCTTTGGGTTGTAACTATTTCTGTGCTCTTCTCACTACCTGTTTCTTATCCAATAACCCTTGAGACACTTAACTATACCCCTGTTGCAGTTGCGAGAAAAATGCATGACAAGGATGCTTTTTCTCCTTCCTCAAATGACGGATACGGCGCCAACGCCGTCGCCAGCGGTCAAATGCAGTCAAACGGTGCCGCCGCCTTTGCTTCCTTTTACTCTGCTTTGCTGAACGAAAATATTCCGCCGTCGATCTCAGCAAGCTGCAGCAATCTTGGCGGCAGCGCTGTCTCGCTTTACCCGCACTCGTCTGACTCGGGAACTCAGAGCCATGGCTACGACTCGTGCTTCATTCAGAAACACCAGGATATGGTGAATCGTCACAGCATGTGTCTCACTCGCCTCGTGGAAACTTCCAAAGAGGTCGAAGATCTGCGACAAGAAAACGCGCAGCTCCGTGCTGCGATCGATGAGCTGCAGAAGAATCTGAACCTCGTGATCCAGGCCTCATTGGAGAGCCAATTCGGTGGTGAAACGCAAACGACACCGTTTGATGTGGTACATGGGTTCCATGGGTTTCACATTGGGGATGGGAAAGAGAACTGCGCTGATTGGAATATTAATATCAATAATAGTAATCATAATAGTAAGAATGAGAAGGTGGATATTTCGGAGGAGAGTCCAACAAGCGTGATTGAGAATAACGGTGATGAGGTAAAGAGGTTCGCATTGCCGAAAAGCATTTCTGTGAGGTCAAATGATTACTTGAAGACTCAATCTGCTGCGGTCGTTCCTACAAATACCACTGCCATGCGCACCAAGGGTGCTACTCGCCCACGCGCCTCCACCATCACTGCTTCGGATGCTGTTCAAAAGGTGTATGTGCGTGGAGGGCAGAAAGAGGAAGAACCCCTTGAGATGGTGGTGTACAACCAAGGGATGTTAAAGACCGAGCTGTGTAACAAATGGCAGGAAACTGGGACATGCCCATATGGAGATCACTGCCAATTTGCTCACGGCATTGGGGAGCTTCGACCAGTCATCCGCCATCCACGCTACAAAACTGAGGTATGCAGAATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTTTATCACAGCCTAATCCCAGAGCATTAATCAAGATGGATAGGTAA 2592 0.4441 MGSFQDRNIILTSHVAKNEAPLLDSGHARLNQLGYKQELKRDLSVLSNFAFSFSIISVLTGITTLYNTGLNYGGPVSMVYGWLVACFFTMVVALSMAEICSSYPTSGGLYYWSAKLAGPSWAPFASWITGWFNIVGQWAVTTSVDYSLAQLVQVIILLSTGGKNGGGYVASKYVVIALHGGILVLHGILNSLPISLLSFLGQLGAAWNFLGVFLMILIPSVATERASASFVFTNFNTDNGAGISSRPYIFLIGLLMSQYTLTGYDSSAHMTEETKDADINGPRGIISAVGISVIVGWGYIIGISFAVTDIPYLLSENNDAGGYAIAEVFYLVFKRRYGNGVGGIICLVIVAVAIFFSGMSSITSNSRMAYAFSRDGAMPLSSLWHKVNKQEVPINAVWLSVIISFCMALTSLGSIVAFDAMVSIATIGLYIAYALPIFFRVTLAQKRFVQGPFNLGRYGIIVGWIAVLWVVTISVLFSLPVSYPITLETLNYTPVAVARKMHDKDAFSPSSNDGYGANAVASGQMQSNGAAAFASFYSALLNENIPPSISASCSNLGGSAVSLYPHSSDSGTQSHGYDSCFIQKHQDMVNRHSMCLTRLVETSKEVEDLRQENAQLRAAIDELQKNLNLVIQASLESQFGGETQTTPFDVVHGFHGFHIGDGKENCADWNININNSNHNSKNEKVDISEESPTSVIENNGDEVKRFALPKSISVRSNDYLKTQSAAVVPTNTTAMRTKGATRPRASTITASDAVQKVYVRGGQKEEEPLEMVVYNQGMLKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQPNPRALIKMDR 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0435 863 Gene3D - 773 811 - -
Lal12g0435 863 Gene3D - 812 848 - -
Lal12g0435 863 Gene3D Amino acid/polyamine transporter I 37 498 - -
Lal12g0435 863 SMART c3hfinal6 816 843 IPR000571 GO:0046872
Lal12g0435 863 SMART c3hfinal6 778 805 IPR000571 GO:0046872
Lal12g0435 863 ProSiteProfiles Zinc finger C3H1-type profile. 816 844 IPR000571 GO:0046872
Lal12g0435 863 Coils Coil 599 633 - -
Lal12g0435 863 PANTHER AMINO-ACID PERMEASE BAT1 HOMOLOG 17 498 - -
Lal12g0435 863 SUPERFAMILY CCCH zinc finger 812 846 IPR036855 GO:0046872
Lal12g0435 863 ProSitePatterns Amino acid permeases signature. 73 104 IPR004840 GO:0006865|GO:0016021|GO:0055085
Lal12g0435 863 PANTHER AMINO-ACID PERMEASE BAT1 17 498 - -
Lal12g0435 863 ProSiteProfiles Zinc finger C3H1-type profile. 778 806 IPR000571 GO:0046872
Lal12g0435 863 Pfam Amino acid permease 43 496 IPR002293 GO:0016020|GO:0022857|GO:0055085
Lal12g0435 863 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 780 804 IPR000571 GO:0046872
Lal12g0435 863 SUPERFAMILY CCCH zinc finger 775 810 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0435 Lal-Chr12 3057086 3071058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0435 90 498 Organic Solute Cotransporters AT2G01170 79.024 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal12g0435 AA_permease_2 1.1e-61 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0435 - - lang:109353860 874.774