Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0427 ATGGCTTCACGAAAACTCGTCTCTTCTCTGATTCGTTCTTCTCTTCGTCGCTCTTCACCCAAACCCTCCATTTCTTCTTCAACCGCTTCCAGATCCAGAATCTCATCTTCTTCTTCTTCTCGTCCTTCTCCCTATGGTTATCTTTTGAATCGTGTTCATTCCACCGCCGCCGCCGCCGCTGCTTCTACCGGTCCTGCTACACCTCCCGCCTCTAAGGAGGTTGGTGGAGGTGGCAAGATCGTGGATGAATACACCGGGAAGGGCGCGATTGGGAAAGTGTGCCAGGTCATCGGTGCCGTCGTCGATGTGAGATTCGATGAGGGTTTGCCACCGATCTTGACCGCTCTTGAAGTTTTGGATCATAACACGAGGTTGGTTTTGGAGGTGGCTCAACATTTGGGTGAGGGCGTTGTCAGAACTATTGCTATGGATGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAACACTGGATCCCCAATTACTGTCCCTGTTGGTAGAGCTACCCTCGGTCGTATTATCAACGTCATCGGAGAGGTTATTGATGAGAAGGGCCCCCTCGATACTGAGCACTATCTTCCCATTCATAGAGAAGCTCCTGCGTTCGTTGAGCAAGCAACTGAGCAGCAGATTCTTGTTACAGGAATCAAGGTTGTTGACCTGCTTGCACCATACCAAAGAGGAGGAAAGATTGGATTGTTCGGCGGTGCTGGTGTTGGAAAAACTGTGCTTATTATGGAACTTATTAACAATGTCGCAAAGGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGAACTCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGCGACAAGCAGTCTGAGAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCTCGTGTTGGTCTTACTGGGCTTACTGTGGCTGAACACTTCCGTGATGCTGAAGGCCAAGATGTGCTTCTTTTCGTTGATAACATTTTCCGTTTCACCCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTATCAACCAACCTTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACAACCAAGAAGGGTTCAATTACCTCTGTCCAAGCCATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACTACCTTCGCTCACTTGGATGCTACAACAGTGTTATCACGACAGATCTCTGAGCTGGGTATCTATCCTGCTGTTGACCCCTTGGATTCCACATCTCGAATGCTTTCCCCACTTATCTTGGGTGAGGACCACTATGAAACTGCTCGTGGTGTACAGAAGGTTCTTCAAAACTACAAAAATCTTCAGGATATCATTGCGATCTTGGGTATGGATGAGCTCAGTGAAGATGATAAATTGACTGTCGCCCGTGCCCGTAAAATTCAACGATTCTTGAGCCAACCTTTCCATGTTGCCGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGACTTGAAGGAGAGCATTAACAGCTTCCAGGGTGTATTGGATGGCAAATATGACGACCTCTCAGAGCAGTCATTCTACATGGTTGGTGGTATTGACGAGGTCATTGCAAAGGCAGAGAAGATTGCTAAGGAATCATCTTCTTAA 1686 0.4798 MASRKLVSSLIRSSLRRSSPKPSISSSTASRSRISSSSSSRPSPYGYLLNRVHSTAAAAAASTGPATPPASKEVGGGGKIVDEYTGKGAIGKVCQVIGAVVDVRFDEGLPPILTALEVLDHNTRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEVIDEKGPLDTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLSEQSFYMVGGIDEVIAKAEKIAKESSS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0427 561 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 216 437 IPR000194 GO:0005524
Lal12g0427 561 ProSitePatterns ATP synthase alpha and beta subunits signature. 428 437 IPR020003 GO:0005524
Lal12g0427 561 MobiDBLite consensus disorder prediction 1 42 - -
Lal12g0427 561 Hamap ATP synthase subunit beta [atpB]. 88 555 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal12g0427 561 Pfam ATP synthase alpha/beta family, beta-barrel domain 93 159 IPR004100 GO:0046034|GO:1902600
Lal12g0427 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 443 IPR027417 -
Lal12g0427 561 Gene3D - 162 439 IPR027417 -
Lal12g0427 561 Gene3D - 440 561 IPR024034 -
Lal12g0427 561 SMART AAA_5 228 500 IPR003593 -
Lal12g0427 561 PANTHER ATP SYNTHASE 3 560 - -
Lal12g0427 561 TIGRFAM atpD: ATP synthase F1, beta subunit 90 555 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal12g0427 561 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 440 556 - -
Lal12g0427 561 CDD F1-ATPase_beta 161 442 - -
Lal12g0427 561 CDD ATP-synt_F1_beta_C 444 551 - -
Lal12g0427 561 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 87 161 IPR036121 GO:0046034|GO:1902600
Lal12g0427 561 Gene3D - 79 161 - -
Lal12g0427 561 PIRSF ATPase_subunit_beta 6 561 - -
Lal12g0427 561 Pfam ATP synthase F1 beta subunit 1 51 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Lal12g0427 561 Gene3D ATP synthase, F1 beta subunit 1 54 IPR042079 -
Lal12g0427 561 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 560 - -
Lal12g0427 561 CDD ATP-synt_F1_beta_N 89 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0427 Lal-Chr12 2996166 2999921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0427 126 498 Primary Pumps ATPases(2) AT1G20260 28.678 3.62e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0427 K02133 - gmx:100789705 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0427 12 2996166 2999921 Lal24g0340 24 2391326 2394925 LSH