Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0416 ATGGATAATAATAACTCTTTTTCTTCTTCTTCTTCTTCTTCTCTTCAACTCTCTCATTCTGCGCCGCCACAGATCTATTCCCGAAAGGACAAGTCTCTTGGATTGCTTTGTTCCAACTTCTTCAAGTTGTACAATCGTGAAGGAACTGGGATGATTGGACTTGACGTAGCTGCTACCAAACTAGGGGTTCAGCGTCGCCGTATGTATGACGTAGTCAACATTTTGGAGAGTGTTGGGATTGTAGCAAGAAGAGCAAAGAACCAATACTCGTGGAAAGGTTTCAAAGAAATTCCTAGGGCTTTAAAAGAGCTTATGGCTTTGAATGAGAAAGAAAATGGAAGGCCTGAAACTGATATCGAAAATAATCCGTTGGAATCATCCAAAACTGATTGCAGAAGAGACAAATCACTAGCCCTTCTGACAGAGAATTTTATAAAGCTTTTCCTCTGCTCGAATGTGGAATATGTTTTGCTCGAAGATGCTGCAAAGGAAATGTTAGGCGATTCCCAGAACTCAACTGCCTTAACAACAAAAACTAGACGTCTATATGATATTGCCAATGTCCTTTCCTGCCTCAATCTGATTAAGAAGACTAACCATCCTGAGAACAGGAAAACAGCATACAGGTGGTTGGGATGCAAAGCCATCACAGGATCTGAAGGTTCTTTGGACCAAAATGCTTCTGAAAGAATTTTTGGTGCTGAAATTACAAATTATAGTTTAAAGAGGAATAACCCAGATTCTTTAATGGATCCTTGTTTGCAAAAGAAGACACGCATGTATCATAAGCCAGGTGACTTAGAAAATGGGCACAATGATAACATCTTGGAGCACCCACCCAGAAACCGTTCAAAGGCCATTGACTTTGGTCCCTTTGCCCCAAACAAATTTTTAGAGCATATAAACAAATCAGGTTCAGGGCTTGAGGACAAGGAGCTATGA 942 0.4055 MDNNNSFSSSSSSSLQLSHSAPPQIYSRKDKSLGLLCSNFFKLYNREGTGMIGLDVAATKLGVQRRRMYDVVNILESVGIVARRAKNQYSWKGFKEIPRALKELMALNEKENGRPETDIENNPLESSKTDCRRDKSLALLTENFIKLFLCSNVEYVLLEDAAKEMLGDSQNSTALTTKTRRLYDIANVLSCLNLIKKTNHPENRKTAYRWLGCKAITGSEGSLDQNASERIFGAEITNYSLKRNNPDSLMDPCLQKKTRMYHKPGDLENGHNDNILEHPPRNRSKAIDFGPFAPNKFLEHINKSGSGLEDKEL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0416 313 SUPERFAMILY "Winged helix" DNA-binding domain 134 213 IPR036390 -
Lal12g0416 313 Pfam E2F/DP family winged-helix DNA-binding domain 134 212 IPR003316 GO:0005667|GO:0006355
Lal12g0416 313 Pfam E2F/DP family winged-helix DNA-binding domain 29 93 IPR003316 GO:0005667|GO:0006355
Lal12g0416 313 SMART E2F_TDP_2 132 212 IPR003316 GO:0005667|GO:0006355
Lal12g0416 313 SMART E2F_TDP_2 28 93 IPR003316 GO:0005667|GO:0006355
Lal12g0416 313 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 12 298 - -
Lal12g0416 313 MobiDBLite consensus disorder prediction 1 21 - -
Lal12g0416 313 SUPERFAMILY "Winged helix" DNA-binding domain 27 91 IPR036390 -
Lal12g0416 313 MobiDBLite consensus disorder prediction 262 283 - -
Lal12g0416 313 PANTHER TRANSCRIPTION FACTOR E2F 12 298 IPR015633 GO:0000978|GO:0006357
Lal12g0416 313 Gene3D - 126 214 IPR036388 -
Lal12g0416 313 Gene3D - 22 95 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0416 Lal-Chr12 2944550 2947758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0416 12 294 E2F-DP Transcription Factor Family AT3G01330 47.573 3.69e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal12g0416 E2F_TDP 4.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0416 - K09391 lang:109346387 568.54