Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0412 ATGGCCACGTTATCAGAGACCTACGCTTGTGTACCCACCACCGAACGTGGCCGCGGCATCCTCATCTCCGGCGACCCTAAATCCAACAACATTCTCTACTGCACCGCTCGATCAGTCATCATCCGTAATCTCGACAACCCTCTTCAGGTTTCCGTCTACGGCGAGCATGCCTATCCTGTCACGGTGGCTCGTTACTCGCCTAACGCCGAGTGGATCGCCTCCGCTGACGTGTCTGGTACCGTACGTATTTGGGGGACCCACAATGATTACGTTCTGAAGAATGAGTTTCGGGTCCTATCGGGTCGGATCGATGATCTTCAGTGGTCCCAAGATGGGTTGAGAATCGTTGCTTGTGGTGATGGCAAGGGAAAATCATTTGTTCGCGCTTTTATGTGGGATTCAGGTTCCACGGTTGGTGATTTTGATGGCCATTCTCGACGGGTTTTAAGTTGTGCATTCAAACCAACAAGGCCTTTCCGAATTGTCTCATGTGGAGAAGACTTTTTAGCCAATTTTTATGAAGGTCCACCATTCAAGTTCAACATGTCCATCAGGCAAAAAACATTCTGTATCTGTAGGGACCATTCGAATTTCGTCAATTGTGTTAGATTTTCTCCTGATGGGAGCAAATTTATTACTGTTAGCTCAGATAGGAAGGGTATTATATATGATGGAAAGACAGGGAACAAACTTGGAGAGTTGTCTGCAGAGGATGGTCACAAGGGCAGCATATATGCTGTTAGTTGGAGTCCTGACAGTAAACAGGTACTTACTGTGTCTGCTGACAAGTCTGCAAAAGTATGGGACATTCTTGAGGATGGTAGTGGCACAGTAAATAAGACTTTCGCTTGTACTGAACCAAGTGGGGTGGAAGACATGCTTGTTGGTTGTCTCTGGCTGAATGATCATCTTCTTACTGTCTCTCTTGGTGGCACTATTTATTTGTATTCTGCTAAAGATTTAGATAAAAGCCCGTTGTCATTATCTGGTCATATGAAAAATGTCACTGTTTTGACTCTGCTCAGCCGAAGTGAAAAGATGCTTTTGTCCAGCAGCTATGATGGAGTGATCATTAGATGGATTCCAGGCATCGGATATGGTGGTAAATATGAGGAGACAAAACAATTTGGATTAATAAAACTGTTAGCAGCTGGTGAGGAGGAAATTATCACTGCTGGATTTGACAACAAGGTATACAGAGTTCCTCTTCTGGGGGATAATTTTGGTCCTGCTGAGCATGTTGATGTTGGAAGTCAGCCTAAGGATTTGAGCCTTGCACTCAATTCGCCTCAAATTGTTCTGATTGCAATTGAATCTGGGATTGTCTTACTTAATGGTTCAAAAATTGTCTCGACTAAACAACTGGGCTTTGTTGTGACTGCATCTGCTATTTCACCTGATGGTAGTGAAGCAATTGTAGGTGGGCAAGATGGTAAGTTGCATATATATTCTGTCTCAGGAGATACAGTAACAGAAGAAAGTGTCCTTGAGAAGCACCGTGGTGCAATCAGTGTAATCAGATATTCTCCAGATGTTTCCATGTTTGCATCAGCTGATCTGAACCGTGAAGCTGTTGTGTGGGACCGTGCTTCCAAAGAGGTGAAGCTTAATAACATGTTGTTTCACACTGCACGTGTTAATTGCCTAGCTTGGTCACCTGATAGCAGTCTGGTAGCTACGGGTTCGCTTGATACATGTGTTATCATATATGAAATTGGAAAGCCAGCAGCAAGCCGCAGAACCATTAAAGGAGCTCATTTAGGTGGGGTATACGGGTTGACTTTTATTGATCAGGAAAGAGTCGTTAGTTCAGGAGAAGATGGGTGTGTTCGTGTATGGAGTTTAGTTTCAGAATAA 1857 0.4416 MATLSETYACVPTTERGRGILISGDPKSNNILYCTARSVIIRNLDNPLQVSVYGEHAYPVTVARYSPNAEWIASADVSGTVRIWGTHNDYVLKNEFRVLSGRIDDLQWSQDGLRIVACGDGKGKSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIVSCGEDFLANFYEGPPFKFNMSIRQKTFCICRDHSNFVNCVRFSPDGSKFITVSSDRKGIIYDGKTGNKLGELSAEDGHKGSIYAVSWSPDSKQVLTVSADKSAKVWDILEDGSGTVNKTFACTEPSGVEDMLVGCLWLNDHLLTVSLGGTIYLYSAKDLDKSPLSLSGHMKNVTVLTLLSRSEKMLLSSSYDGVIIRWIPGIGYGGKYEETKQFGLIKLLAAGEEEIITAGFDNKVYRVPLLGDNFGPAEHVDVGSQPKDLSLALNSPQIVLIAIESGIVLLNGSKIVSTKQLGFVVTASAISPDGSEAIVGGQDGKLHIYSVSGDTVTEESVLEKHRGAISVIRYSPDVSMFASADLNREAVVWDRASKEVKLNNMLFHTARVNCLAWSPDSSLVATGSLDTCVIIYEIGKPAASRRTIKGAHLGGVYGLTFIDQERVVSSGEDGCVRVWSLVSE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0412 618 ProSitePatterns Trp-Asp (WD) repeats signature. 256 270 IPR019775 -
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 618 - -
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Lal12g0412 618 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 618 - -
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 572 IPR001680 GO:0005515
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 270 IPR001680 GO:0005515
Lal12g0412 618 CDD WD40 56 360 - -
Lal12g0412 618 Pfam WD domain, G-beta repeat 230 269 IPR001680 GO:0005515
Lal12g0412 618 Pfam WD domain, G-beta repeat 51 84 IPR001680 GO:0005515
Lal12g0412 618 Pfam WD domain, G-beta repeat 585 614 IPR001680 GO:0005515
Lal12g0412 618 Pfam WD domain, G-beta repeat 190 219 IPR001680 GO:0005515
Lal12g0412 618 Pfam WD domain, G-beta repeat 542 570 IPR001680 GO:0005515
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 270 - -
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Lal12g0412 618 Gene3D - 7 614 IPR015943 GO:0005515
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
Lal12g0412 618 Gene3D - 11 347 IPR015943 GO:0005515
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 528 - -
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 618 IPR001680 GO:0005515
Lal12g0412 618 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 618 - -
Lal12g0412 618 SMART WD40_4 227 269 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 445 484 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 89 133 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 134 174 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 575 614 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 275 317 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 321 361 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 185 224 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 533 571 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 46 85 IPR001680 GO:0005515
Lal12g0412 618 SMART WD40_4 489 528 IPR001680 GO:0005515
Lal12g0412 618 SUPERFAMILY WD40 repeat-like 301 615 IPR036322 GO:0005515
Lal12g0412 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 572 - -
Lal12g0412 618 SUPERFAMILY WD40 repeat-like 25 360 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0412 Lal-Chr12 2921385 2929009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0412 191 517 Eukaryotic Initiation Factors Gene Family AT2G46290 24.332 1.61e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0412 K24736 - gmx:100798693 1105.51