Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0410 ATGGAGTCAGTGCCTTCTGATGCATCTACTTCACCTCCTGTTAAAGACACTGGAGGACAGGCTTCTGCTGCTGTAGTCTCTGGGCAAGATAATTATGCACATGAGGCACCATCTAGGGGGTCTCCCACTGGCATATCATCTTGGACCAAGAACTTGAAAGTTTCTCAGTCATTTTCTGGCTCCCAAGATGACTCGTCAAGTGGCAATGCCGGGAAATCGGCCTTTTCACGCATAACTAGTAATATAGGGCTGCGGTTGTCTCCGAAATCTCCTCCTGTGGCAGAGGACAGTTCCAGTGAAACAGCTGGCCAATCTAACTTGTTTGGAAGTATTACAAAAGGTCTGGTTGACACTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAAGCACGACATGTTGTTTCTCAGAACAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATTTGACATATATCACAGAAAACATCATTGCTATGGGGTTCCCTGCTGGCGACATGAGTTCTGGGTTTTTTGGTTACGTCGAAGGATTTTACAGAAATCATATGGTAGAAGTGATTAAGTTTTTTGAGACTCACCACAAGGATAAATACAAAGTATACAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTATTTGAGGGGAAAGTTGCTAGCTTTCCATTTGATGACCATAATTGCCCTCCAATTCAACTGATTATATCATTTTGTCAAAGTGCTTACTCGTGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCGAGGACTGGGTTGATGATTTCTAGTCTTCTTTTATTCTTAAAGTTTTTCCCAACTGCTGAGGAGTCAATGGATTACTACAATCAGAAAAGATGCATCGATGGAAAAGGGCTTGTTCTGCCTAGTCAGATTAGGTATGTTAAACATTTTGAACGGGTCTTGACTTACTTCAATGGAGAAAACCCATCTGCTCGCAGGTGCATGCTTAGAGGATTTCGGCTCCACAGATGCCCTTACTGGATCAGGCCCTCCATAACTGTCTCAGATCATAGTGGCGTGTTGTTCTCAACCAAAAAACATCCAAGAACCAAGGAACTTTTGCCAGAAGACATTTGGTTCAGTGCGCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTTACGGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGACAAGGAGATTTTTACTGCTGGTTGAACACGACTATGACAGAAAATCGGAAAGTGTTGAACACCAGTGATCTTGATGGATTTGACAAGAGGAAATTGCCTTCTCCAGGATTTCTGGTTGAAGTTGTGCTAGTGGATTATAATGGTAACACTGTAACTTCCAAACCTGATATTGTGACAAATAAATCAGATGAGAGTTCAAGTAATAGTCCCGCCCCAGTTGAAGCGAGCACCATTGCGTTGAATGTGGACAAAGAATCAGGGAGTAATGATAAAGATGATGTGTTTTCAGATGGTGAGGCAGAGCATTCAGCTTTTTCAACAACCAAGCAAACAAAAGCAGCTTCTGAAGCAGTTACCAATGTGACCACTGGAACTGAGCCCAACAGAATTTTGAATCAAATCACAAATGCAACGGAACAAGTTTCCGTAGGAACTAAGAGCTCTACAGCAATTCATAGCACTGGTGAGCCGAAAAGTGATGTTGATGGAAGAACAATGTCAGGTCTTGAGGCACCCGGCACAGAAAGTGAGTTTAAAGCCATGGCTGCAGATGCTTCTGTTTTTACATTTGGAGATGAAGAAGACTATGAAAGTGATTGA 1818 0.4285 MESVPSDASTSPPVKDTGGQASAAVVSGQDNYAHEAPSRGSPTGISSWTKNLKVSQSFSGSQDDSSSGNAGKSAFSRITSNIGLRLSPKSPPVAEDSSSETAGQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDLTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMVEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKHFERVLTYFNGENPSARRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKELLPEDIWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFLVEVVLVDYNGNTVTSKPDIVTNKSDESSSNSPAPVEASTIALNVDKESGSNDKDDVFSDGEAEHSAFSTTKQTKAASEAVTNVTTGTEPNRILNQITNATEQVSVGTKSSTAIHSTGEPKSDVDGRTMSGLEAPGTESEFKAMAADASVFTFGDEEDYESD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0410 605 MobiDBLite consensus disorder prediction 491 505 - -
Lal12g0410 605 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
Lal12g0410 605 SMART PTEN_C2_2 323 451 IPR014020 -
Lal12g0410 605 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Lal12g0410 605 MobiDBLite consensus disorder prediction 459 515 - -
Lal12g0410 605 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Lal12g0410 605 MobiDBLite consensus disorder prediction 548 579 - -
Lal12g0410 605 MobiDBLite consensus disorder prediction 1 48 - -
Lal12g0410 605 MobiDBLite consensus disorder prediction 459 481 - -
Lal12g0410 605 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 232 292 IPR000387 GO:0016311|GO:0016791
Lal12g0410 605 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Lal12g0410 605 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 9 605 - -
Lal12g0410 605 MobiDBLite consensus disorder prediction 55 74 - -
Lal12g0410 605 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 152 320 IPR029021 -
Lal12g0410 605 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Lal12g0410 605 MobiDBLite consensus disorder prediction 1 27 - -
Lal12g0410 605 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 9 605 - -
Lal12g0410 605 MobiDBLite consensus disorder prediction 34 48 - -
Lal12g0410 605 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0410 Lal-Chr12 2909114 2914190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0410 3 605 Protein tyrosine phosphatase (PTP) family AT3G19420 66.558 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0410 K01110 - gmx:100784003 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0410 12 2909114 2914190 Lal12g0410 12 2909114 2914190 ECH
Lal12g0410 12 2909114 2914190 Lal24g0326 24 2312249 2317547 ECH
Lal12g0410 12 2909114 2914190 Lal24g0326 24 2312249 2317547 LSH
Lal15g0178 15 1241035 1247320 Lal12g0410 12 2909114 2914190 PCT