Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0409 ATGGCAATCCATCATCATCACATGAATGACCAACTTGAACAACAACAACAACACAATGAAAATGTTTCATATGTTCTTGATGCTCTTTACTGTGATGAAGTGAAATGGGAAGAAGAAGAAGATGATGAAGAAAAAGGAAAAGGAGAGTTTTCATCATCAGAAGAGAGTTATGTGACAACAACAAACAATGACAATGCTTCTCTTCTTTTCCCTCTGCTTTTGTTAGACCAATATTTGTTCTGTGAAGATGAAGAGTTAAACTCTCTTTTCTCCAAAGAAAAGAATGAACAACAAGCCTATTACTTTAATATTCATAATAATATTAATATGGGTTTAGATTATTCTCCCCTTTGTGTTGCACGTCGTGAAGCATTTGAATGGATACTAAAAGTGAATGGTTATTATGGCTTCTCTGCTCTCACTGCAGCACTGGCTTTTACTTACCTAGATAGATTCATTTCCAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATTCAGCTTATAGCTGTTACTTGCATCTCTTTGGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAGTGCAAGATGCTAAATATGTGTTTGAGGCAAAAACTATTCAGAGAATGGAGCTGCTTGTGTTATCTACCCTTAAGTGGAAGATGCACCCAGTCACACCACTCTCATTTCTAGATCACATTATAAGGAGGCTGGGATTGAAAACCAATCTTCACTGGGAATTTCTTAGGCGCTGTGAACATCTTCTTCTATATGTACTCTTAGATTCAAGATTTATTGGTTGTCTTCCTTCTGTATTGGCCACTTCAATTATGCTGCATGTTATAGACCAGATTGGGCACGAGGATGGTTTGAAATACAAAACTCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAATGCTACAATGATATTCTTCATCTTATAGGCTCAAATGCCAATAATTATGGCAATAAGAACCCTCTAAAGCGCAAGTATGACCAAATCCCTGGTAGCCCAAGTGGCATAATTGATGCTTCTTTTTCCTCTAATGGCTCTAACGATTCTTGGGCAGTTGGGTCATCCTTATACTCATCAACAGAAACAGAGGTTTTATTGAAGAAGAACAGAACCCAAGGACAACTAATGAAAATGTCACCACATAAGAGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTAA 1206 0.3781 MAIHHHHMNDQLEQQQQHNENVSYVLDALYCDEVKWEEEEDDEEKGKGEFSSSEESYVTTTNNDNASLLFPLLLLDQYLFCEDEELNSLFSKEKNEQQAYYFNIHNNINMGLDYSPLCVARREAFEWILKVNGYYGFSALTAALAFTYLDRFISSFHFQREKPWMIQLIAVTCISLAAKVEETQVPLLLDLQVQDAKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTNLHWEFLRRCEHLLLYVLLDSRFIGCLPSVLATSIMLHVIDQIGHEDGLKYKTQLLSVLKISKEKVDECYNDILHLIGSNANNYGNKNPLKRKYDQIPGSPSGIIDASFSSNGSNDSWAVGSSLYSSTETEVLLKKNRTQGQLMKMSPHKRVIVGIVGTSP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0409 401 Pfam Cyclin, N-terminal domain 119 220 IPR006671 -
Lal12g0409 401 MobiDBLite consensus disorder prediction 37 56 - -
Lal12g0409 401 Gene3D - 120 221 - -
Lal12g0409 401 SUPERFAMILY Cyclin-like 224 334 IPR036915 -
Lal12g0409 401 CDD CYCLIN 121 213 IPR013763 -
Lal12g0409 401 Gene3D - 222 313 - -
Lal12g0409 401 PANTHER CYCLINS 51 376 IPR039361 -
Lal12g0409 401 PANTHER CYCLIN D3.1 PROTEIN 51 376 - -
Lal12g0409 401 SUPERFAMILY Cyclin-like 80 221 IPR036915 -
Lal12g0409 401 SMART Cyclin_C_2 223 353 IPR004367 -
Lal12g0409 401 SMART cyclin_7 126 214 IPR013763 -
Lal12g0409 401 Pfam Cyclin, C-terminal domain 223 336 IPR004367 -
Lal12g0409 401 ProSitePatterns Cyclins signature. 121 152 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0409 Lal-Chr12 2906137 2908184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0409 13 316 Core Cell Cycle Gene Families AT4G34160 52.632 5.04e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0409 K14505 - gmx:547740 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0409 12 2906137 2908184 Lal12g0409 12 2906137 2908184 ECH
Lal12g0409 12 2906137 2908184 Lal24g0325 24 2308314 2310804 ECH
Lal4g0132 4 824655 826647 Lal12g0409 12 2906137 2908184 ECH
Lal21g0217 21 1428124 1430020 Lal12g0409 12 2906137 2908184 ECH
Lal12g0409 12 2906137 2908184 Lal13g0405 13 2535872 2538092 LSH
Lal12g0409 12 2906137 2908184 Lal24g0325 24 2308314 2310804 LSH
Lal16g0233 16 1397711 1399795 Lal12g0409 12 2906137 2908184 PCT
Lal15g1257 15 14175067 14177312 Lal12g0409 12 2906137 2908184 PCT
Lal23g0189 23 1672243 1674788 Lal12g0409 12 2906137 2908184 PCT