Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0393 ATGTTGCGTTTGTTCTACAGCCCTCTTCGTCGGTGTTTCCCAGGCGGCGGCGGCGGCGGTGGCGGTGGTGACGGACTTCTATGGCACAGTGAATTGAAGCCTCATGCCTCCGGTGAGTTCTCCATCGCCGTCGCTCAAGCCAATTACAGTCTCGAAGATCAGAGCCAAGTGTTTACCTCTCCCTCCGCCACCTATATCGGCGTTTACGACGGTCATGGTGGACCTGAAGCTTCTAGATTCATCAACAGGCATCTCTTCTCTTATTTGAACAAATTTGTCACTGAACAAGGGGGATTATCAGTGGATGTGATTAAAAAAGCGTTTAGTGCCACAGAGGAAGATTTCTGTCGTTTGGTGAAGCTGTCAATGCACATTAGTCCCCAGATTGTTTCTGTAGGATCATGTTGTCTTCTTGGTGCAATTGCTGATAATGTGTTGTATGTTGCCAACCTTGGAGACTCTAGAGTTGTTCTTGGTAGGAGGTATACTGGGAGCAAGGGTTCTTCGGTAGTGGCAGAACGGTTGTCAACTGATCATAATGTAGCTGATGAAGATGTGAGAAGAGAAGTTGAAGCCCTCCATCCTGATGATTCACATACTGTGGTATATACCCGTGGAGTTTGGAGGATTAAGGGTATTATACAGGTATCAAGATCTATAGGGGATGTGTATTTGAAGAAACCTGATATCTATAGAGACCCAGATTTTCAGCAATATTTAAATCCTATTCCTTTGAAGTATCCTGTAATGACATCTGAACCATCAATCATTATCAGGGATCTAGAGCCAGAAGATTTATTCTTGATATTTGCATCTGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCGGTTGATATTGTTTTCAAATATCCTAGAGCTGGAATTGCCAAGAGACTAGTTAGAACTGCCATTCAGAAAGCTGCTAAGAAGAGAGAGATGAGATATGAAGATATAATGAAAATTGAGAAAGGAATAAGAAGACACTTCCATGATGATATCACTGTTATTGTAATCTTTCTTGATCACCAAAGAGGGTCCTCTCGTGGTAGATTTAAGCAAACTGTTGGTTGTACAACTGCACCTGCTGATATTTTCTCCCTTAATGCGGAAGAGGTAGAAGCCGAGAATAGTATGCTTCATTCAGTTGGATAA 1155 0.4286 MLRLFYSPLRRCFPGGGGGGGGGDGLLWHSELKPHASGEFSIAVAQANYSLEDQSQVFTSPSATYIGVYDGHGGPEASRFINRHLFSYLNKFVTEQGGLSVDVIKKAFSATEEDFCRLVKLSMHISPQIVSVGSCCLLGAIADNVLYVANLGDSRVVLGRRYTGSKGSSVVAERLSTDHNVADEDVRREVEALHPDDSHTVVYTRGVWRIKGIIQVSRSIGDVYLKKPDIYRDPDFQQYLNPIPLKYPVMTSEPSIIIRDLEPEDLFLIFASDGLWEQLSDEAAVDIVFKYPRAGIAKRLVRTAIQKAAKKREMRYEDIMKIEKGIRRHFHDDITVIVIFLDHQRGSSRGRFKQTVGCTTAPADIFSLNAEEVEAENSMLHSVG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0393 384 PANTHER ALPHABET, ISOFORM E-RELATED 5 376 - -
Lal12g0393 384 CDD PP2Cc 52 341 IPR001932 -
Lal12g0393 384 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 5 376 - -
Lal12g0393 384 Pfam Protein phosphatase 2C 60 310 IPR001932 -
Lal12g0393 384 ProSiteProfiles PPM-type phosphatase domain profile. 39 341 IPR001932 -
Lal12g0393 384 SUPERFAMILY PP2C-like 48 342 IPR036457 -
Lal12g0393 384 Gene3D - 29 349 IPR036457 -
Lal12g0393 384 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Lal12g0393 384 SMART PP2C_4 33 339 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0393 Lal-Chr12 2785172 2788303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0393 21 348 PP2C-type Phosphatase Gene Family AT3G51370 55.952 4.50e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0393 - K01102 lang:109346406 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0393 12 2785172 2788303 Lal12g0393 12 2785172 2788303 ECH
Lal12g0393 12 2785172 2788303 Lal24g0300 24 2152038 2157175 ECH
Lal12g0393 12 2785172 2788303 Lal13g0385 13 2414474 2418026 LSH
Lal12g0393 12 2785172 2788303 Lal24g0300 24 2152038 2157175 LSH
Lal16g0240 16 1437767 1440515 Lal12g0393 12 2785172 2788303 PCT