Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0391 ATGGTTGATGCATTAAATGAAGCGCAACGCCGTGGTAGTGCCCTAGCTGTTTCTCCTAAGAGGGACAGTGCTATGTTTGAAGGGGACAGAGACTTTGAGCCACACAATGGAATTGAATTTGAATCTCATGAAGCAGCCTATTTATTTTATCAGGAATATGCCAAATCTATGGGATTCACCACATCAATAAAAAACAGCAGACGCTCAAAGAAAACGAAGGAATTTATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACACCTGAGTCTGACAGTGGGAGCAGTCGAAGGCCAACTGTAAAGAAGACAGATTGCAAAGCCTGCATGCATGTGAAGAGAAGGCCGGATGGAAATTGGATTATTCATGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAGTTAGCTGAGAAAAATAATATTGACATTTTGCATGCCGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAGGCAGTCTGGTGGTTCTCAACGCATTGGATCTCTCTTGGATGACATAAACTATCAGTTCGATAGAGGCCAGTATTTGGCTTTGGATGAGGGAGATGCCCAAGTTATGCTTGAATATTTCAAGCGAATCCAAAAGGATAATCCCAACTTCTTCTATGCTATAGATTTAAATGAAGAGCAACGGTTAAGAAACCTATTTTGGGTTGATGCAAAGAGTAGAAGTGACTATCTCAGCTTTAATGATGTAGTTTCATTTGATACCACTTACATAAAAAGCAATGATAAGTTGCCATTTGCTCCTTTTGTTGGAGTGAACCATCATTCTCAACCTATATTGCTTGGATGTGCATTGGTTGCGGATGAGACTAAATCGACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCGATGGGTGGTCAAGCTCCCAAAATTGTAATCAGTGATCAGGACAACGCTTTGAAGACTGCAATTGAAGAAGTGTTCCCAAACGTTCGACATTGCTTTTCTCTTTGGCATGTACTGGAAAAGATACCCGAAAACCTGTCTTTTGTGATCAAACAGTATAAGAACTTCTTGCCAAAGTTTAACAAGTGCATTTTCAAGTCATGGACAGATGAACAATTCGACATGAGATGGTGGAAAATGGTCACTAGATTTGAACTCCAATATGATGTGTGGTTTCAGTCATTGTATGAAGACCGGAAAAAGTGGGTGCCAACATATATGGGGGATGCATTTTTAGCTGGAATGTCTACACATCAACGCTCTGAAAGTATGAACTCTTTCTTTGACAAATATATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAATATGGGATAATTCTTCAGAATAGGTATGAAGAGGAAGCCATTGCAGATTTTGATACTTTGCACAAACAACCAGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTTTTGGGTGTAGCTGGCTGTCAATCTAGGATACAGGCTGGAGATGGAACTATCGCAAAATTTATAGTTCAAGATTATGAGAAGGATGAGGAGTTTTTGGTAACTTGGAGTGAGATGAGCTCAGAGGTCTCTTGCTTCTGTCGAATGTTTGAGTATAAAGGCTTCCTTTGCAGGCATGCATTGAGTGTTCTCCAACGTTGTGGATGTTCAAGTGTTCCATCTCATTATATTATGAAGAGGTGGACCAAAGATGCTAAAAATAGCCAATCCTTGGCAGATAGGACTTGTAGGATTCAAACTCGGGTGCAACGTTATAATGACTTGTGTAAACAAGCTATTGATTTGAGTGAAGAAGGATCTTTATCTGAAGATAGCTATAATGTTGTTTTTCGTGCACTTGTTGATGCCTTGAAGAACTGCGTGCTTGTGAATAATTCTAATCACAATGGTGCAGAAGCTAGCAACAATTCTTACAGCTTTCGTGAAGCAGACGAAAATCAGGGTATCCTTGCTTTGAAACCAAGTAAGAAGAGGACCACAGCTAGGAAAAGAAAGGTGCAATTAGAGCAGGATGTTATACTTCTTGATGCGCAAGATAGCCTGCAGCAAATGGATAACCTTAGCTCAGATGCAATAACCCTTAATGGATATTACGGTGCCCAGCAAAATGTGCAAGGACTGGTACAGTTGAACTTAATGGAGCCACCTCATGATAGTTACTATGTTAATCAGCAGAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCAAGCCATGATGGTTTTTTTCGAACACAGCAAAACATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCAACAACTACTTTTGGATATAGCCTTCAGGATGAGCCAGAACCTCAGTTTCATGGCAACAGTTCAAGAAATTAG 2424 0.3965 MVDALNEAQRRGSALAVSPKRDSAMFEGDRDFEPHNGIEFESHEAAYLFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPTVKKTDCKACMHVKRRPDGNWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGSQRIGSLLDDINYQFDRGQYLALDEGDAQVMLEYFKRIQKDNPNFFYAIDLNEEQRLRNLFWVDAKSRSDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKSTFVWLMKTWLRAMGGQAPKIVISDQDNALKTAIEEVFPNVRHCFSLWHVLEKIPENLSFVIKQYKNFLPKFNKCIFKSWTDEQFDMRWWKMVTRFELQYDVWFQSLYEDRKKWVPTYMGDAFLAGMSTHQRSESMNSFFDKYIHKKITLKEFVKQYGIILQNRYEEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIQAGDGTIAKFIVQDYEKDEEFLVTWSEMSSEVSCFCRMFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKNSQSLADRTCRIQTRVQRYNDLCKQAIDLSEEGSLSEDSYNVVFRALVDALKNCVLVNNSNHNGAEASNNSYSFREADENQGILALKPSKKRTTARKRKVQLEQDVILLDAQDSLQQMDNLSSDAITLNGYYGAQQNVQGLVQLNLMEPPHDSYYVNQQSMQGLGPLNSMAPSHDGFFRTQQNIHGLGGQLEFRPTTTFGYSLQDEPEPQFHGNSSRN 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0391 807 Pfam MULE transposase domain 255 348 IPR018289 -
Lal12g0391 807 Pfam SWIM zinc finger 545 570 IPR007527 GO:0008270
Lal12g0391 807 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 723 IPR031052 GO:0006355
Lal12g0391 807 SMART 26again6 546 573 IPR006564 GO:0008270
Lal12g0391 807 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g0391 807 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
Lal12g0391 807 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 14 723 - -
Lal12g0391 807 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0391 Lal-Chr12 2771353 2776222 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal12g0391 MULE 4.5e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0391 - - lang:109346405 1610.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0391 12 2771353 2776222 Lal12g0391 12 2771353 2776222 ECH