Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0388 ATGGGTCACTCCAATGTTTGGAACTCTCACCCCAAGAATTATGGTCCTGGTTCTCGCACATGGTATGTTACTGCTTCAAACCGTGTATGCGGGAATCCACATGGCTTGATCAGGAAGTATGGTCTTAATTGTTGCAGGCAATGCTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGTATCGTTAA 189 0.4444 MGHSNVWNSHPKNYGPGSRTWYVTASNRVCGNPHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0388 62 Pfam Ribosomal protein S14p/S29e 7 62 IPR001209 GO:0003735|GO:0005840|GO:0006412
Lal12g0388 62 Gene3D 30s Ribosomal Protein S14; Chain N 1 62 IPR043140 -
Lal12g0388 62 PANTHER 40S RIBOSOMAL PROTEIN S29 1 62 IPR039744 GO:0003735|GO:0008270
Lal12g0388 62 PANTHER 40S RIBOSOMAL PROTEIN S29 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0388 Lal-Chr12 2756255 2757911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0388 1 62 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 83.871 6.20e-32 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0388 K02980 - gmx:100305476 117.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0388 12 2756255 2757911 Lal13g0379 13 2392081 2393569 LSH
Lal12g0388 12 2756255 2757911 Lal24g0297 24 2138327 2139587 LSH