Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0383 ATGGAATCTACTCAGCTGATTTCTGAAGAATGGTGCTCTCTTAGTGGACTAAACATAGCTGAAGAAGCTGACTTCATGACTCAGTTGCTTGGTGGAAATTCCACCTTAGGGCTAGACCATGAATCCACAGACACCAATAATACCAATTCATATTTTCCTTCGAATGATGCAAATACTAATTTCTTCTATTTCTCCCAAGGGAGGAATAGCTCCAGTGCTGATAGTGGAAATATATTTTCCACTACAAGTAGTGCAACTTGCTCCTTTGATCCAGCACCAAACTTTGACTCCATGTCAATGGATTTTTGCTTGGGAGATTCCAAATTCAATAATCCACATATTTTTCAATGGAATGATAACTTAAGCCAACAGATAAATGTACTAAGCAGTGATGAAGAGCTAGGTCTAGATCAAGGGAAGCATGTTCTTAGTGACTACAATTTGCATGCAGAAGAGAATAAAAACAGAAACCTGGTGAACTCAGCAAAAAGATCAAGGAGGTCAATAGAGGAGGTCTCAGAAAACATGAGGAATGCCAAATCAAGGAAGATTCCAAAATCTGCTTCTATGAGTAGCTTCAATGAGGAGGATAGAACTTGTATTGGACTCCAAAGGCAAGGCTCTAGAAGCTGTGTTTCAGAAGGTGACTCTGATCCTTCTTTGGAGATAAATGGAGGGGAATCTCCATGTCTGAGCCCAAAAGATCCCACACCTCCCAATTGTAATAGAAAATCAAGATCTACTGCCTCTCCTGCCACTGATTCACAGACCCTTTATGCAAGAAAGAGAAGGGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAGCCTTGTCCCTAATGGAACTAAGGTGGATATTAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCATCAAATTAAGCTTCTGAGCTCTGATGATCTATGGATGTATGCTCCCATTGCTTACAATGGAATCAACATTGGACTAGACTTTATTACAACCAAAGGACTATAG 1008 0.3988 MESTQLISEEWCSLSGLNIAEEADFMTQLLGGNSTLGLDHESTDTNNTNSYFPSNDANTNFFYFSQGRNSSSADSGNIFSTTSSATCSFDPAPNFDSMSMDFCLGDSKFNNPHIFQWNDNLSQQINVLSSDEELGLDQGKHVLSDYNLHAEENKNRNLVNSAKRSRRSIEEVSENMRNAKSRKIPKSASMSSFNEEDRTCIGLQRQGSRSCVSEGDSDPSLEINGGESPCLSPKDPTPPNCNRKSRSTASPATDSQTLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQHQIKLLSSDDLWMYAPIAYNGINIGLDFITTKGL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0383 335 CDD bHLH_AtIND_like 252 314 - -
Lal12g0383 335 MobiDBLite consensus disorder prediction 154 181 - -
Lal12g0383 335 SMART finulus 257 306 IPR011598 GO:0046983
Lal12g0383 335 Coils Coil 162 182 - -
Lal12g0383 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 329 - -
Lal12g0383 335 MobiDBLite consensus disorder prediction 238 257 - -
Lal12g0383 335 Gene3D - 251 309 IPR036638 GO:0046983
Lal12g0383 335 Pfam Helix-loop-helix DNA-binding domain 261 301 IPR011598 GO:0046983
Lal12g0383 335 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 34 329 - -
Lal12g0383 335 MobiDBLite consensus disorder prediction 182 217 - -
Lal12g0383 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 316 IPR036638 GO:0046983
Lal12g0383 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 300 IPR011598 GO:0046983
Lal12g0383 335 MobiDBLite consensus disorder prediction 154 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0383 Lal-Chr12 2712335 2713704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0383 156 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 50.538 1.05e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g0383 HLH 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0383 - - gmx:100816788 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0383 12 2712335 2713704 Lal13g0372 13 2329717 2331379 LSH
Lal12g0383 12 2712335 2713704 Lal24g0293 24 2108383 2110168 LSH