Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0375 ATGATAATAGGTAGTTCAACATGTGATTTTCATCTTCTCTTGTTCTTTGGTAGTAGAAATGCAAGTGTAGTTATTCTTCTGCAGCTGAAAATGCAGTTCAGATCATTGCGGAATAGTGACAAAATTGAACAATGGATGAAGCAGTCTATTCTTAAAGTCATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCATGTGACAAAACTGTGTACCTGGTTGATAAGCTAACCGCAGATGGCCGTATCTATCATAAGGCTTGCTTTCGATGCCACCATTGCCGGAATACCCTTAAGCTAAGCAACTACTGTTCTTTTGAGGGGGTGCTCTACTGCAGACCTCATTATGATCAACTCTACAAGCGAACTGGTAGCCTTGACAAAAGCTTTGAGGGAACCCCCAAAATTCTGAAACAAGAAAAACCAGCCAGTGGTAATGAGAATGCTAAGGTAATGGCAAACGTGTTCTTGGGCACCAGAGACAAATGTTCGGGTTGCAAAAAGACTGTATATCCTACTGAGAGGGTTACGGTTAATGGTACTCCCTATCATAAGGGCTGCTTCAAATGTACCTATGGAGGTTGCACTATAAACTCAGCAAACTTTGTTACACATGAGGGGAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAGCTTGAGAATGAAGTAGAGAAAAATTCTATGACTGAGAATGTCACTGCCATGGGAATTGTTGCTTAA 747 0.4137 MIIGSSTCDFHLLLFFGSRNASVVILLQLKMQFRSLRNSDKIEQWMKQSILKVMASFGGTTQKCMACDKTVYLVDKLTADGRIYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKILKQEKPASGNENAKVMANVFLGTRDKCSGCKKTVYPTERVTVNGTPYHKGCFKCTYGGCTINSANFVTHEGKLYCKHHHIQLFKEKGNYSQLENEVEKNSMTENVTAMGIVA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0375 248 SMART lim_4 63 115 IPR001781 -
Lal12g0375 248 SMART lim_4 162 214 IPR001781 -
Lal12g0375 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 228 - -
Lal12g0375 248 ProSitePatterns LIM zinc-binding domain signature. 64 98 IPR001781 -
Lal12g0375 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 90 130 - -
Lal12g0375 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 188 - -
Lal12g0375 248 Gene3D Cysteine Rich Protein 158 246 - -
Lal12g0375 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 57 89 - -
Lal12g0375 248 CDD LIM1_SF3 60 122 - -
Lal12g0375 248 ProSiteProfiles LIM domain profile. 161 221 IPR001781 -
Lal12g0375 248 Pfam LIM domain 64 118 IPR001781 -
Lal12g0375 248 Pfam LIM domain 163 218 IPR001781 -
Lal12g0375 248 PANTHER OS06G0237300 PROTEIN 54 245 IPR045268 GO:0051015
Lal12g0375 248 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 54 245 - -
Lal12g0375 248 ProSiteProfiles LIM domain profile. 62 122 IPR001781 -
Lal12g0375 248 Gene3D Cysteine Rich Protein 59 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0375 Lal-Chr12 2667798 2680985 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal12g0375 LIM 2.8e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0375 K09377 - gmx:100306027 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0375 12 2667798 2680985 Lal12g0375 12 2667798 2680985 ECH
Lal12g0375 12 2667798 2680985 Lal13g0368 13 2312770 2315310 LSH
Lal12g0375 12 2667798 2680985 Lal24g0289 24 2077970 2090978 LSH