Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0374 ATGCAGAATGAGGAAGGACAAATCACTGAGCTATATATCCCTAGGAAGTGTTCTGCTACAAATAGATTGATAACATCTAAAGATCATGCCTCTGTCCAAATTAACATTGGCCATTTGGATGAGAGTGGTGTTTACAATGGAAATTTCACCACACTTGCCCTTTGTGGCTTCGTTCGTGCACAGGGTGATGCTGACAGTTCAGTAGATCGCCTGTGGACAAAGAAGAAGGTTGAAGTAAAGCAACACTAG 249 0.4217 MQNEEGQITELYIPRKCSATNRLITSKDHASVQINIGHLDESGVYNGNFTTLALCGFVRAQGDADSSVDRLWTKKKVEVKQH 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0374 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lal12g0374 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lal12g0374 82 Gene3D - 1 81 IPR038579 -
Lal12g0374 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lal12g0374 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Lal12g0374 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0374 Lal-Chr12 2664032 2665258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0374 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.366 2.53e-51 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0374 K02971 - gmx:100817753 153.295