Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0365 ATGTACTTGAAGCATTCATGTTCAAGTAACAACACCTTCACTCCCAATACCGCTTACCAATCCAATCTCCACTCCATCCTCACAACCCTATCTTCCCATGCAGCCACCATCCATTTCTACAACACCACCGTCTCCGCCACCGCCGAAACCGTTTATGGACTCTTCATGTGCCGTGGTGACGTCACCAGTGATATGTGCCAAGAATGCACGACAATTGCAACCAAGAACATAGCCTCACGGTGTGTTTACTCTAAAGAAGCCGTGATTTGGTATCACATGTGCATGGTTCGTTATTCCAACCGTTATTTCTTCTCCACTGTGGAGGAATGGCCTAGGCTTAACTTTGTGGCTTATAACGTTACTAGGAATGTAATCAAGAAAGGAAGTTATGGGTTTTTGTTAGCTAACACTTTGAATGATGCTGTGACTGAGGCTGCAAATATGGATCCTTTAGGAAATAAGAAATTTGCAACAAGAAATGTCACTTTGAGTGGGTCTCAGAAACAGAAACTGTATGTTCTTGTTCAGTGCACTCCAGATCTGACAAGCCAAGATTGCAAAAGGTGTTTGAGTGATATAATGAGTAGCATTCCTTTTTGTTGTCTTGGAAGGGATGGTGGAATGGTTCTGTATCCTAGCTGCAATTTGATGTATGCGTTAGATCTATTCTACAGGGATGCTTCTATTGCTGTTGCAGTCACACCTACTTCTCTTGCTTTGGATGAATCACCACTTCCAATTGGAAATGAAAGTACTACTTTGGAGTCACTGCAATTCGACTTTTCTACAATTGAAGCGGCTACAAATAAGTTTTCTTTTGAGAACCTGATAGGCCAAGGAGGATTTGGAAAAGTTTACAAGGGTACTCTTCTTGATGGTCGAGAAGTAGCTGTAAAGAGACTCTCAAAAAGTTCTGGGCAAGGTGCAGACGAATTCAAGAACGAGGTCTTACTAATAGCCAAGCTTCAACACAGAAATTTAGTGGCATTATTAGGATTTTGCTTACAAGAGGATGAGAAAATACTTGTTTATGAATTTGTTCCAAACAAGAGCCTCGACTATTTTTTATTCGATCCTCAAAAGCAAAGGTTGTTAAGTTGGCTGGAGAGATATAAAATTATTGGAGGGATTGCTCAAGCAATTCAATATTTACATGAATATTCTCGTCTTAAAATCATACATCGAGACATCAAACCTAGTAACGTTTTATTAGATGACAAAATGAGTCCAAAAATTTCAGATTTTGGAATGGCAAGGATGGTTGCTATAGACCAAGAACAAGGAAGAACAAATAGAGTTGTAGGAACATACCTTAATATTGGTTGTTCTCTTTACAGTGAATATGCCATGCTTGGAAGGTTTTCTGAGAAATCAGATATCTTCAGCTTCGGAGTTATGGTTTTGGAGATCATCAGTGGCAAAAAACATTCTACTTCTTATCAACCATACTATGTTGATGGCCTATTGAGTCATGCTTGGAAACAATGGAGGGATGGGGCACCATTTGAAATATTGGATCCAAGTCTGCATGGATCATGTTCTCAAACTGAAGTAATGAAATGCATTCAGATTGGTCTATTATGTGTTCAAGAAATTCCTGATGATAGGCCACTAATGGCTCAAAAATACTACAAATGCATAACCACTCTAATGGAAGAAAATGTGAAAGAAGTTGAGCTCTGA 1683 0.3933 MYLKHSCSSNNTFTPNTAYQSNLHSILTTLSSHAATIHFYNTTVSATAETVYGLFMCRGDVTSDMCQECTTIATKNIASRCVYSKEAVIWYHMCMVRYSNRYFFSTVEEWPRLNFVAYNVTRNVIKKGSYGFLLANTLNDAVTEAANMDPLGNKKFATRNVTLSGSQKQKLYVLVQCTPDLTSQDCKRCLSDIMSSIPFCCLGRDGGMVLYPSCNLMYALDLFYRDASIAVAVTPTSLALDESPLPIGNESTTLESLQFDFSTIEAATNKFSFENLIGQGGFGKVYKGTLLDGREVAVKRLSKSSGQGADEFKNEVLLIAKLQHRNLVALLGFCLQEDEKILVYEFVPNKSLDYFLFDPQKQRLLSWLERYKIIGGIAQAIQYLHEYSRLKIIHRDIKPSNVLLDDKMSPKISDFGMARMVAIDQEQGRTNRVVGTYLNIGCSLYSEYAMLGRFSEKSDIFSFGVMVLEIISGKKHSTSYQPYYVDGLLSHAWKQWRDGAPFEILDPSLHGSCSQTEVMKCIQIGLLCVQEIPDDRPLMAQKYYKCITTLMEENVKEVEL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0365 560 ProSiteProfiles Protein kinase domain profile. 271 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0365 560 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Lal12g0365 560 SUPERFAMILY Protein kinase-like (PK-like) 254 541 IPR011009 -
Lal12g0365 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Lal12g0365 560 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 2 233 - -
Lal12g0365 560 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 248 540 - -
Lal12g0365 560 Gene3D Phosphorylase Kinase; domain 1 245 346 - -
Lal12g0365 560 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 233 - -
Lal12g0365 560 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 248 540 - -
Lal12g0365 560 Gene3D Transferase(Phosphotransferase) domain 1 347 558 - -
Lal12g0365 560 SMART serkin_6 271 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0365 560 Pfam Protein tyrosine and serine/threonine kinase 272 480 IPR001245 GO:0004672|GO:0006468
Lal12g0365 560 Pfam Salt stress response/antifungal 7 100 IPR002902 -
Lal12g0365 560 Pfam Salt stress response/antifungal 131 219 IPR002902 -
Lal12g0365 560 ProSiteProfiles Gnk2-homologous domain profile. 112 223 IPR002902 -
Lal12g0365 560 ProSiteProfiles Gnk2-homologous domain profile. 1 103 IPR002902 -
Lal12g0365 560 Gene3D - 114 223 IPR038408 -
Lal12g0365 560 Gene3D - 1 103 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0365 Lal-Chr12 2607092 2611438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0365 2 539 Receptor kinase-like Gene Family AT4G05200 43.697 2.16e-165 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal12g0365 PK_Tyr_Ser-Thr 6.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0365 - - lang:109335395 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0365 12 2607092 2611438 Lal24g0276 24 1982995 1986716 LSH