Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0357 ATGTACTCTCGGAATTTGATACTCACCGCAGAAAACCCTAGACACTCGGCGGCGTTTCAACAGCCACTACCTCCGGCAACTGAGAAACCCCTCATGAGCAATGAGAACATCGCGCAGAAGCCGCCCCCTTCGATTCTTGTGGGTCGCTTCAAGGCACTGCTCAAGCAGCGTGACGACGAACTTAGGGATTATCCCGGTGCCCCCGTGCCGCCACCCACCACCGACGAAATTGTTGAGATTTACGAGATGCTCTTGTCGGAGCTCACGTGCAATTTGAAGCCTATCATCACCGATCTCACAATTATTGCTGAACAGCAGAGGGAACATGCTAAGGGTATTGCTGATGCAATTTGCGCTCGGATTCTTGAGGTGCCTGTGGATCAAAAGCTACCTGCACTCTATCTTTTGGACAGTATTGTGAAGAATTATGGTCAAGAATATGTTAGATACTTCTCTCTGCGTTTGCCAGAAGTTTTCTGTGAAGCATATAGGCAAGTCCAGCCTAGTTTGCATTCTTCTATGCGCCATCTGTTTAAGACGTGGTCAAAAGTCTTCCCACCTTCTTCCCTACGCAAGATTGAAGCTCAATTGCAATTTTCTGAAGCAGTTAATAATCAATCATCTACTATGAATTCCCTCAGGGCATCTGAATCTCCTCGACCTAGTCATGGCATTCATGTTAATCCAAAGTACTTGCGACAGTTAGATCGCTCAACTGTGGATAATGTTGGTGGTGAAAAGTTGGACTCATCAGGAAAGGCTAGCAATACAAATTTTGGCCTTGTAACTAGTAAGACACAACAATATGTATCTAGCAGAATTGGAATGTCCTCTTCACCTTCAAGAATAGGAATTGATAGGTCTTTGTCTGCTTCTATAGATGAATATGCAGTTGGCAATTCTGCTGCCAGGATAGTTGAGAGAGAGTCTCCCCGTCCTGCTGTTGATTATGGAATAGCCAAAGCTTTGGGTAGAGATGAAGAGTTGAGTGAGTGGCAGCTAAAGCAGTATTCTGGAGATGGTCTAAATCGGTTTCAAACTTCTATGACACACAGCCTTATTAATGGACATCAGCGTCAAAGTCCAAGAGCACTGATTGATGCGTATGGTTGTGACAAAAGCCAAGAAACTTCAAGCAATATGCATTTGTTAGTTGAACGGCTGGACAGAAATGGTAAAGATAAGGTGTTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGATTACTGGTTTATTGCCATCAACAATTGGTTTCCCCAGGGAAAGGCCTGGTATGGTTGCAGCTAATGCAACTTCGCCAGAGCAAGATATCAGGAAGGGTTGGTCTAGTGGGTCTCAGCTTCCTCCAGTGGATGATTCTTCTGTTATAGCAGAAGACGCATTTCCTTCTTCGGCTCATGGTCATGCCTTCGTGGGTCAGATATCTGGTTTCCAAAATCAAATAAATCAGAATCTGGGATCTTGTCAACCTCGTGAAGCTTGGAAGATTTCTCATCATCCATCTAATTCTTCACAATACTTATTTAATATTAGAGGTCAACCAAGGAGTCTTTTGATGCCCCCTATTGATAATGTTCCCAGTAAAAATGCAAACCAATTTGGCATTCGACCTGCAGTGTCAAGGATTTCTGTTCTTGCCTCTAATATGGAGACTCGTCCACCAGCTTTACCGGCATCTTTTGACATAAGGCCTTTGGTAAATGTGCATGCCACTCATCCTCCCACCTTAAATCCGATATTTCCATTGCCGAGACATTTTAGGAGTCAGTTTGAAGCTATAAATACAAGTAACCCCATTGTGAATCACGGTCCAAATAAATCTCCAAATATGCCTGAACAGTTTTTGGACAGTGCTGAGAACAAGGATACAGGTAAAGCAAATATGCATCAGTTGCCTAATCATTTTTCTGGACTGATTTCACCCAACCAGCAAAACCATGGACAAGTACCACAACTGCAGTTTTTTCCACCTCGGGATCCATCTGTCCCACCATATAGTCATGGAATCTCTTTCAGAGGACGTGGTGCTTCTCTAAGTACAACCATGTCAAATCCGATGTCTGTTTTACAATTCCCATTACCAGCCCAAGGTGTTGCAAATAACTCCTTACATTTTCAACCAGGAGCCCATCCACCTCTACCTCCAGGTCGTCCTTTTGCTCCATCACAAATGATGCTTCATCCAAATGCTAGTCCATTTATGCCAAACCAACAGCCAACTGTTGCATATTCTAATTTAATTAATTCACTAATGTCTCAAGGCATGATCTCATTGGCTAACCAGCCCCCTGTACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGCTTCGTCATGAATCTGCAATCAATGCTTTATATGTTGATCTTCCTAGACAATGCACCACTTGTGGGCTCCGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGACTGGCATGTGACCAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCATCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCGGAGGCGTTGGGAGCAGAATCAGTTCCCGGTTTTTTGCCAACTGAGATAGTAGATGAAAAGAAAGATGATGATGAGTTGGCAGTACCAGCTGAAGAGGACCAAAATACATGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCTACAGGAATAACACCAGGCATGGACAGGTCACAGTTAGGGCCCATTATTCATGCTAAATGCAGATCAGAATCTACTGTGCCTCCCTCTGAAGATTTTGGACAGGATGCAGGGGGTGCCAATGAAGAGGGTAGTCAAAGAAAACGCATGCGGAGTTGA 2937 0.4392 MYSRNLILTAENPRHSAAFQQPLPPATEKPLMSNENIAQKPPPSILVGRFKALLKQRDDELRDYPGAPVPPPTTDEIVEIYEMLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPVDQKLPALYLLDSIVKNYGQEYVRYFSLRLPEVFCEAYRQVQPSLHSSMRHLFKTWSKVFPPSSLRKIEAQLQFSEAVNNQSSTMNSLRASESPRPSHGIHVNPKYLRQLDRSTVDNVGGEKLDSSGKASNTNFGLVTSKTQQYVSSRIGMSSSPSRIGIDRSLSASIDEYAVGNSAARIVERESPRPAVDYGIAKALGRDEELSEWQLKQYSGDGLNRFQTSMTHSLINGHQRQSPRALIDAYGCDKSQETSSNMHLLVERLDRNGKDKVLSTSWQNTEEEEFDWEDMSPTLVDHSRITGLLPSTIGFPRERPGMVAANATSPEQDIRKGWSSGSQLPPVDDSSVIAEDAFPSSAHGHAFVGQISGFQNQINQNLGSCQPREAWKISHHPSNSSQYLFNIRGQPRSLLMPPIDNVPSKNANQFGIRPAVSRISVLASNMETRPPALPASFDIRPLVNVHATHPPTLNPIFPLPRHFRSQFEAINTSNPIVNHGPNKSPNMPEQFLDSAENKDTGKANMHQLPNHFSGLISPNQQNHGQVPQLQFFPPRDPSVPPYSHGISFRGRGASLSTTMSNPMSVLQFPLPAQGVANNSLHFQPGAHPPLPPGRPFAPSQMMLHPNASPFMPNQQPTVAYSNLINSLMSQGMISLANQPPVQDSVGTEFNPDILKLRHESAINALYVDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSDRMWLSGAEALGAESVPGFLPTEIVDEKKDDDELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGITPGMDRSQLGPIIHAKCRSESTVPPSEDFGQDAGGANEEGSQRKRMRS 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0357 978 ProSitePatterns Zinc finger C2H2 type domain signature. 812 832 IPR013087 -
Lal12g0357 978 MobiDBLite consensus disorder prediction 947 978 - -
Lal12g0357 978 Gene3D - 71 199 IPR008942 -
Lal12g0357 978 SUPERFAMILY ENTH/VHS domain 73 200 IPR008942 -
Lal12g0357 978 SMART 558neu5 76 198 IPR006569 -
Lal12g0357 978 Pfam CID domain 91 192 IPR006569 -
Lal12g0357 978 CDD CID_Pcf11 81 198 - -
Lal12g0357 978 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Lal12g0357 978 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 40 952 - -
Lal12g0357 978 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 952 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0357 Lal-Chr12 2558477 2564797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0357 701 978 C2H2 Transcription Factor Family AT4G04885 61.484 1.68e-105 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0357 K14400 - gmx:100794796 1390.94