Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0347 ATGCTTTTCTCAAAGCTAGATGACTCTCCTATGTTCCGCAAACAGATACAATGCATGGAGGAAGGTGTTGAATCATTGAGAGAGAGAAGTTTGAAGTTCTACAAAGGGTGTAGAAAATACACTGAAGAACTTGGAGAGGCATATGATGGAGATATTGCATTTGCAAGCTCTCTGGAAATGTTTGGTGGAGGGCATAATGACCCACTCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTTAGAGAAATTGGGACATACAAGGAAGTCCTTCGCTCCCAGGTTGAGCATATGTTAAGTGACAGGTTGTTTCAGTTTGTCAATATTGATTTGCAAGAGGTTAAGGATCCAAGATTGTTGCAGGAAGCACGGAAATGCTTTGACAAGGCTAGCCTTATATATGACCAGGCTCGTGAAAAGTTTTTGTCACTGAGAAAAGGCAAAAAAAATGATGTTGCTACTGCCCTAGAAGAGGAGCTTCATAATGCAAGATCTGCATTTGAGCAAGCTCGATTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGATTTTCTGGAAGCAGTCAGTGGGACAATGGATGCTCATCTTCGCTACTTCAAACAGGGTTATGAATTGTTGCACCAAATGGAGCCGTATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAACTATGAGCATGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGAAGATCGATCGAGAGAGTAGGTGGTTTTCAAATGGTTCTAATGGGTCTCCTAATGGCGATGGCATACAGGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGTGAAGGGAAAGGTTCAAACTATTCGACAAGGGTATCTCTCAAAGCGTTCCTCAAACCTAAGAGGGGACTGGAAAAGGAGATTCTTTGTTCTTGATAGCCGTGGAATGCTGTATTACTATCGTAAACAGAACAACAAATCTTCTGGGCCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTCTAAGTCGATGGCTGTCTTCTCATTATCATGGTGGGGTACATGATGAGAAATCTGTTGTTCATCACACTGTGAACCTGCTTACATCCACAATCAAAGTTGATGCAGACCAATCAGATTTAAGGTTTTGCTTCAGAATCATTTCGCCCACAAAGAACTACACTTTGCAGGCAGAGAGTGCTCTCGACCAAATGGATTGGATTGAGAAGATAACAGGTGTTATTGCCTCATTGCTGAGTTCACAGATTCCAGAAAGGTATTTTCCGGCAAGTCCGATGGGAAATGGTTATCATAGGTCTGCCAGTGAGAATAGTTATTTTCGAAGATCAGGTTTTGATCACTTTGCTGCAGACGAATGTGCAGTAGATAGAAGACTTGCTACTGCACATATGGAGCGCCCCACAAGAAGTTTGCTGCAGCAGCAATCCTGTACTAAAAATGAGAAGACAATTGATATGTTGCGAAGAGTTTCCGGGAATGATAAATGTGCTGATTGTGGCACTCCAGAACCTGATTGGGCATCACTAAATCTCGGCATACTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAATCTTGGTGTACACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTTTGGGAACCTTCTGTCATAAGCTTGTTTCAGTCTCTTGGGAATACTTTTGCCAACTCAATCTGGGAGGAACTACTGCAACTGAAAAGTGCCTTTCAGGTTGATCTTGTTCCCACAGGAAAACCTTGTCAATCCGATTCTCCATCCATGAAGGAAAAATTTATCCGTGCAAAGTATGCAGAAAAGTTTTTTGTTCGCAAACCGAAGGACAATCAATACCATCTCCTGGTGGCACGACAGATATGGGAGGCTGTTCATACTAATGACATAAAATCTGTATACCGCTACATTGTTAATTCTGATGTTGACATCAATGCTTCTTATGAGCAATATAGCAGCAACTCTTTAACCCTTGCCAATGTAATGTTACTACAAGATCAGGCAAGCCAGGACCACAGTTCTACATTACCAAGGAGTTCGCCGGACTTCGCCTCTACTAGCCCTTCGAACTCGGTGGGCATTAAAGAAGGCCGGGCAATGGACAATCTAGTCAGGTGCAGCCTACTTCACCTTGCTTGTGAAACTGCGGATATTGGTATGCTGGAGCTCCTCCTACAGTATGGTGCAAATATTAATGCAAATGATTTGAAAGGTCAAAAACCACTACATCGCTGTATTCTAAAAGGCAAATCTGCATTTGCAAGATTACTTCTTTCAAGGGGGGCTGATCCTCAAGCAGTTGATGAGGAGGAAAGAACTCCGATTGAGCTTGCTGCACCGTCAAACGTCGATGACAGTGAGGTCCTTGCTCTGTTGTCTGATTGGAATGTATTACATTGA 2478 0.4257 MLFSKLDDSPMFRKQIQCMEEGVESLRERSLKFYKGCRKYTEELGEAYDGDIAFASSLEMFGGGHNDPLSVAFGGPVMTKFTIAFREIGTYKEVLRSQVEHMLSDRLFQFVNIDLQEVKDPRLLQEARKCFDKASLIYDQAREKFLSLRKGKKNDVATALEEELHNARSAFEQARFNLVTALSNVEAKKRFDFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEHAALNERMQEYKRKIDRESRWFSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAVKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQNNKSSGPSSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVVHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERYFPASPMGNGYHRSASENSYFRRSGFDHFAADECAVDRRLATAHMERPTRSLLQQQSCTKNEKTIDMLRRVSGNDKCADCGTPEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSIWEELLQLKSAFQVDLVPTGKPCQSDSPSMKEKFIRAKYAEKFFVRKPKDNQYHLLVARQIWEAVHTNDIKSVYRYIVNSDVDINASYEQYSSNSLTLANVMLLQDQASQDHSSTLPRSSPDFASTSPSNSVGIKEGRAMDNLVRCSLLHLACETADIGMLELLLQYGANINANDLKGQKPLHRCILKGKSAFARLLLSRGADPQAVDEEERTPIELAAPSNVDDSEVLALLSDWNVLH 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0347 825 CDD PH_ACAP 301 438 - -
Lal12g0347 825 Gene3D Arfaptin homology (AH) domain/BAR domain 3 256 IPR027267 -
Lal12g0347 825 Gene3D - 291 444 IPR011993 -
Lal12g0347 825 ProSiteProfiles Ankyrin repeat region circular profile. 733 761 - -
Lal12g0347 825 SMART 5bar 11 224 IPR004148 GO:0005515|GO:0005737
Lal12g0347 825 MobiDBLite consensus disorder prediction 335 354 - -
Lal12g0347 825 CDD BAR_SFC_plant 14 221 IPR035670 -
Lal12g0347 825 Pfam PH domain 300 433 IPR001849 -
Lal12g0347 825 SMART PH_update 299 436 IPR001849 -
Lal12g0347 825 SUPERFAMILY ArfGap/RecO-like zinc finger 505 633 IPR037278 -
Lal12g0347 825 ProSiteProfiles Ankyrin repeat profile. 733 762 IPR002110 GO:0005515
Lal12g0347 825 Gene3D Arf GTPase activating protein 487 637 IPR038508 -
Lal12g0347 825 PANTHER CENTAURIN/ARF 1 820 IPR045258 GO:0005096
Lal12g0347 825 Coils Coil 233 253 - -
Lal12g0347 825 SUPERFAMILY BAR/IMD domain-like 6 321 IPR027267 -
Lal12g0347 825 Pfam Ankyrin repeats (many copies) 750 804 IPR002110 GO:0005515
Lal12g0347 825 Gene3D - 638 819 IPR036770 -
Lal12g0347 825 SMART arf_gap_3 506 638 IPR001164 GO:0005096
Lal12g0347 825 PRINTS HIV Rev interacting protein signature 518 537 IPR001164 GO:0005096
Lal12g0347 825 PRINTS HIV Rev interacting protein signature 537 554 IPR001164 GO:0005096
Lal12g0347 825 PRINTS HIV Rev interacting protein signature 560 581 IPR001164 GO:0005096
Lal12g0347 825 ProSiteProfiles Ankyrin repeat region circular profile. 763 795 - -
Lal12g0347 825 SUPERFAMILY Ankyrin repeat 648 809 IPR036770 -
Lal12g0347 825 ProSiteProfiles PH domain profile. 298 434 IPR001849 -
Lal12g0347 825 ProSiteProfiles Ankyrin repeat profile. 763 795 IPR002110 GO:0005515
Lal12g0347 825 Pfam BAR domain of APPL family 6 239 - -
Lal12g0347 825 ProSiteProfiles ARF GTPase-activating proteins domain profile. 506 638 IPR001164 GO:0005096
Lal12g0347 825 SUPERFAMILY PH domain-like 299 438 - -
Lal12g0347 825 SMART ANK_2a 763 792 IPR002110 GO:0005515
Lal12g0347 825 SMART ANK_2a 730 759 IPR002110 GO:0005515
Lal12g0347 825 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 820 - -
Lal12g0347 825 MobiDBLite consensus disorder prediction 696 718 - -
Lal12g0347 825 Coils Coil 157 177 - -
Lal12g0347 825 CDD ArfGap 509 625 - -
Lal12g0347 825 Pfam Putative GTPase activating protein for Arf 507 633 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0347 Lal-Chr12 2487704 2496978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0347 510 632 C2H2 Transcription Factor Family AT4G21160 44.444 3.29e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0347 K12489 - gmx:100798227 1348.18