Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0340 ATGTCAGTTTTACATCAATGCCCTTTCAACTCTCCCAGATTGGTTATGAACAAGGTCTTATCCAAATCTCAACATGAAGGTGATGGTGCAGTTGTTAGAAGAGGCATTGGAAGAAGCGAGTTACCAAGATTGGATCCATTTCTGATGTTAGATTACTTTTCAGTAACCCCTCCTGCAGGGTTTCCTGATCATCCACACAGAGGTTTTGAGACTGTCACCTACATGCTACAGGGAGGCATAACTCATCAAGATTTTGCTGGGCGCAAGGGTACAATAAGAACTGGTGATGTTCAGTGGATGACAGCAGGCAGAGGAATAGTTCACTCTGAAATGCCTGCAGGAGAAGGAACTCACAAGGGAATACAACTTTGGATCAATTTATCTGCAAGAGAAAAAATGATTGAACCAAACTATCAAGAACTTGTAAGTGAGGACATACCAACAGCAGAAGAAGATGGTGTTGAAGTGAGAGTTATAGCAGGAGAAGCAATGGGAATTCATTCACCAGTTTACACAAGAACTCCAACAATGTTCCTAGATTTTACTCTCAACCCTGGTGCTGAATTGCACCAAACTATTCCAGACTCATGGAATGCCTTTGTTTATGTGATTGATGGTGAAGGAGTTTTTGGTTTCCAAGGTTGTTCACCAGTTACAAGTCACAATGTCCTAGTCTTAAGTCTAGGTGATGGTGTTAGTGTATGGAATAAGTCTTCAAATGCATTGAGGTTTGTGCTGATTGGAGGAAAACCACTGAATGAGCCAGTGGCACAGTATGGTCCATTTGTGATGAATACACAATCTGAGATTGAAAAAACTATTCAAGATTATCACTATAGCAAGAATGGCTTTGAAAATGGAAAATCTTGGAGATCTCAATAG 882 0.4059 MSVLHQCPFNSPRLVMNKVLSKSQHEGDGAVVRRGIGRSELPRLDPFLMLDYFSVTPPAGFPDHPHRGFETVTYMLQGGITHQDFAGRKGTIRTGDVQWMTAGRGIVHSEMPAGEGTHKGIQLWINLSAREKMIEPNYQELVSEDIPTAEEDGVEVRVIAGEAMGIHSPVYTRTPTMFLDFTLNPGAELHQTIPDSWNAFVYVIDGEGVFGFQGCSPVTSHNVLVLSLGDGVSVWNKSSNALRFVLIGGKPLNEPVAQYGPFVMNTQSEIEKTIQDYHYSKNGFENGKSWRSQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0340 293 PIRSF Pirin 11 291 IPR012093 -
Lal12g0340 293 CDD cupin_pirin_C 175 251 - -
Lal12g0340 293 PANTHER PIRIN-RELATED 3 293 IPR012093 -
Lal12g0340 293 Pfam Pirin 33 125 IPR003829 -
Lal12g0340 293 Pfam Pirin C-terminal cupin domain 178 282 IPR008778 -
Lal12g0340 293 CDD cupin_pirin_N 30 127 - -
Lal12g0340 293 Gene3D Jelly Rolls 26 278 IPR014710 -
Lal12g0340 293 SUPERFAMILY RmlC-like cupins 13 291 IPR011051 -
Lal12g0340 293 Gene3D Jelly Rolls 147 252 IPR014710 -
Lal12g0340 293 PANTHER PIRIN-LIKE PROTEIN 3 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0340 Lal-Chr12 2429672 2432013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0340 12 289 Calmodulin-binding Proteins AT3G59220 63.214 4.52e-128 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0340 K06911 - jre:108986319 474.552