Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0339 ATGTATTCCTCCTCTTCTTCTTCATCTTCCTCTTTTCAATCAGGGTTGACCCGTTATGGTTCAGCCCCCAGTTCTCTCCTTACCACCGCCGTTGACGCCGTCATCAGCGCCGGATCCCACCCTTTCCCTCCACGCTACTTCTCCGCTGACTCGTCCGAACCCAGCTCTTTGGCGTTGGGCGGAGGAGGATCAACCAATTTGGTTCGTCAGAAAAGCTCCCCCGCCGGGTTCCTCAATCACCTCGATAATGCAGGCTTTACGATCACAAGGGGCGCGTCAACCTATGCCTCCCATGGACATGTCTCTAATGGTGGTCATGCCCATGCAGGGTCAAGGTTGAAGACTCAATTGAGCTTCACAGGCCAAGATTCTCTTTCCCAGATATCAGAGGTGAATGAGAATATTGAGGAGGGCACCACTTCTGATAATGGCCATCGTAGACCTTTGCATTCTTATGCTACCACTAGCTTTGGAATGGAACCTTGGGACAATTCTAATTCCATTGTCTTCTCCGCCCCACCAACCAAACGGTCTAAGAATATGGATGGTGACATTCTGAACTGTCTAGATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACAGTGGAGAAGCTATTACATATTCCTGAAGATTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCTACTCATCCACGTAGCATTGCAGAAAGGGAGAGAAGAACTAGAATAAGTGGAAAACTGAAGAAATTACAGGACCTTGTGCCTAATATGGATAAGCAAACAAGCTATTCAGACATGCTAGATTTGGCTGTTCAACATATTAAAGGTCTTCAAGGTCAAGTTCAGAAACTTCACCATGAACTTGAGAACTGCACTTGTGGATGCAAAGAAAGCACGTGA 906 0.4724 MYSSSSSSSSSFQSGLTRYGSAPSSLLTTAVDAVISAGSHPFPPRYFSADSSEPSSLALGGGGSTNLVRQKSSPAGFLNHLDNAGFTITRGASTYASHGHVSNGGHAHAGSRLKTQLSFTGQDSLSQISEVNENIEEGTTSDNGHRRPLHSYATTSFGMEPWDNSNSIVFSAPPTKRSKNMDGDILNCLDALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQGQVQKLHHELENCTCGCKEST 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0339 301 Pfam Helix-loop-helix DNA-binding domain 234 280 IPR011598 GO:0046983
Lal12g0339 301 Gene3D - 230 298 IPR036638 GO:0046983
Lal12g0339 301 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 294 - -
Lal12g0339 301 SMART finulus 235 285 IPR011598 GO:0046983
Lal12g0339 301 CDD bHLH_AtbHLH_like 234 286 IPR045239 -
Lal12g0339 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 294 IPR036638 GO:0046983
Lal12g0339 301 MobiDBLite consensus disorder prediction 49 65 - -
Lal12g0339 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Lal12g0339 301 PANTHER TRANSCRIPTION FACTOR BHLH129 15 294 - -
Lal12g0339 301 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0339 Lal-Chr12 2425386 2428464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0339 67 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 58.091 3.35e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g0339 HLH 8.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0339 - - lang:109353868 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0339 12 2425386 2428464 Lal24g0264 24 1889817 1894275 LSH