Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0335 ATGATTTCAAACTCTGGGATTAATGGTAACTATGAAACTTCAGATTCTAATGCAATGAATTTTGCATTCGATGCAGCGAAACGCGTAAGATATGAAGAGAATGCAAGGTTACAAAAGTTCAAGGGTGTTGTGCCTCAGCAAAATGGGCATTGGGGGGCACAAATATATGCAAATCACCAAAGAATCTGGCTAGGCACATTCAAATCAGAAAGAGAGGCTGCAATGGCTTATGACAGCGCAACGATCAAGCTTCGAAGCGGAGAAAGCCATAGGAACTTTCCATGGAATGATGAAACAGTTCAAGAGCCTCAGTTTCAAAGCCACTATAGCACAGAAACAGTGCTAAGCATGATAAAAGATGGAATCTATCAATCAAAATTTGCAACATTTCTTAGGACTCAAACACAAGGTGATAATAATATTGTTAGTAACAAATGTGAAAATATAAGTATGAAAGTTAATGAAGAAAACTTGTGTTGCACGTTACTTTTTCAAAAAGAATTGACACCAAGTGATGTTGGAAAACTCAATAGGCTTGTCATTCCAAAAAAACATGCAGTTACATATTTCCCTTATGTATGTGGCATTGCAGAGGCTAAGAATAATGACATTGATGTTGATATTGAGGTTACATTTTATGACAATCTTATGAGGTCATGGAAATTTAGATATTGTTATTGGAAGAGTAGCCAGAGTTTTGTGTTCACAAGAGGGTGGAATAGGTTTGTGAAGGATAAGAAATTAAAGGCTAAAGATACCATTGCATTTTATGTGTGTGAACCTGTAAATTTGAGAAAAGGGGGAGAAGTATTTTCATTGATAGATATAATCTATTGTAATGATGATAATGAGAGAAAGCAATGTTTTGAAGTGAGAGGAGATACAAAACAAGGTTTAAGAAATGTGTTAACTCTAAGTGATGAAGAAGAAGATGAAAAAGATGAAGATGTAGGCCAAGAAACAAAGGATATAGCATTGGATTCACCAAATAATAGTGCACAAAAAGGTTTGAGGCTGTTTGGTGTGTGTATAAACTGA 1038 0.3536 MISNSGINGNYETSDSNAMNFAFDAAKRVRYEENARLQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDETVQEPQFQSHYSTETVLSMIKDGIYQSKFATFLRTQTQGDNNIVSNKCENISMKVNEENLCCTLLFQKELTPSDVGKLNRLVIPKKHAVTYFPYVCGIAEAKNNDIDVDIEVTFYDNLMRSWKFRYCYWKSSQSFVFTRGWNRFVKDKKLKAKDTIAFYVCEPVNLRKGGEVFSLIDIIYCNDDNERKQCFEVRGDTKQGLRNVLTLSDEEEDEKDEDVGQETKDIALDSPNNSAQKGLRLFGVCIN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0335 345 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700|GO:0006355
Lal12g0335 345 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Lal12g0335 345 ProSiteProfiles B3 DNA-binding domain profile. 164 277 IPR003340 GO:0003677
Lal12g0335 345 SMART B3_2 164 267 IPR003340 GO:0003677
Lal12g0335 345 SMART rav1_2 39 100 IPR001471 GO:0003700|GO:0006355
Lal12g0335 345 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Lal12g0335 345 Gene3D - 161 274 IPR015300 -
Lal12g0335 345 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Lal12g0335 345 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Lal12g0335 345 Pfam B3 DNA binding domain 164 258 IPR003340 GO:0003677
Lal12g0335 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 345 IPR044800 GO:0003700
Lal12g0335 345 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 345 - -
Lal12g0335 345 CDD B3_DNA 163 257 IPR003340 GO:0003677
Lal12g0335 345 SUPERFAMILY DNA-binding pseudobarrel domain 162 261 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0335 Lal-Chr12 2392726 2393763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0335 39 283 RAV Transcription Factor Family AT1G50680 59.690 3.46e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lal12g0335 B3 2.2e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0335 K09287 - gmx:102660503 405.216