Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0322 ATGGCGAAGACAAATTCATCACATGGAAGAAAGAGAGTTGATGCTGTTGATTCTCGTTCTGCTTCCGTTCTTCTTCGCACCAAAGATGGCAGTGCTTTCACTCGTTGTGAAGAGTGCAACAAGGATGTTCCAATTGCACTCATCAGCATGCACAGTTGCAGCTTAGAAGCTAAGATTAAAATGAATCTCGAGTCTCAGGTTGTGGAGGTTACTGAAGTCAAGAAGCAAGAGAGGAAGAAGCCCAAATCTAAAGAACCAGATGCTAAAAGAGCTAAAACTGAGAAAGTGAAGAAGGTGAAGGATCCTAACATTCCCAAGCGTCCTGCCACAGCTTTCTTTCTATTTCTGGAGGACTTCAGAAAAGCTTTTAAAGAAGCAAATCGTGATTCTAAGGACGTTAAAAGGGTTGGTAAAGAGGGTGGTGAGAAGTGGAGATCTATGACTGATGAGGAACAAGAGGGATTTGACAAATCTGATAAGGATGCTGCTCCAGCAGAAGTGGAAGAGTTAACTGGTGAGGAGTAG 525 0.4305 MAKTNSSHGRKRVDAVDSRSASVLLRTKDGSAFTRCEECNKDVPIALISMHSCSLEAKIKMNLESQVVEVTEVKKQERKKPKSKEPDAKRAKTEKVKKVKDPNIPKRPATAFFLFLEDFRKAFKEANRDSKDVKRVGKEGGEKWRSMTDEEQEGFDKSDKDAAPAEVEELTGEE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0322 174 MobiDBLite consensus disorder prediction 130 174 - -
Lal12g0322 174 Gene3D High mobility group box domain 88 169 IPR036910 -
Lal12g0322 174 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g0322 174 MobiDBLite consensus disorder prediction 130 167 - -
Lal12g0322 174 Coils Coil 60 80 - -
Lal12g0322 174 SUPERFAMILY HMG-box 92 157 IPR036910 -
Lal12g0322 174 CDD HMGB-UBF_HMG-box 105 157 - -
Lal12g0322 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 105 157 IPR009071 -
Lal12g0322 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 157 - -
Lal12g0322 174 Pfam HMG (high mobility group) box 105 158 IPR009071 -
Lal12g0322 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 157 - -
Lal12g0322 174 MobiDBLite consensus disorder prediction 71 103 - -
Lal12g0322 174 SMART hmgende2 104 169 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0322 Lal-Chr12 2266489 2270825 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal12g0322 HMG_box 4.6e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0322 K25507 - gmx:100810345 225.713