Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0317 ATGGCCAACTATTTGATGCTATTTTCACGTGGAGGTGAATTTGAGACAACCTATTTCAACACTTCCAACAACAACAACAACAATAACAACAAGTGTGTGTTTGAGTGCAAAACATGTAACAGGAAATTCCAATCGTTTCAAGCACTTGGTGGCCACCGTGCTAGCCATAAGAAGGTAAGGTTAATGGGAGAAGAAAGAGAGGAAATGGTTAATAATGATTCAACTACTCTTCCAAAGCCTAAAACTCATGAATGTTCCATTTGTGGTTTGGAATTTGCAATAGGGCAAGCTTTGGGAGGCCATATGAGACGTCATAGAGTACCATCTATTTCAAATGCAAACATGCAAAGTTCTATTACAACTTTGAGTTGTAGTGTTCATACAAAAAGGAAGAAGGAGAATAGCAACAAAGTTTTGTTTTTGGATTTGAATTTAACACCATTAGAGAATGATATGCAGATTTTCAAGATTAGACAAACAATTCCTTTGCTGGGTTCTTTCATTTGA 507 0.3649 MANYLMLFSRGGEFETTYFNTSNNNNNNNNKCVFECKTCNRKFQSFQALGGHRASHKKVRLMGEEREEMVNNDSTTLPKPKTHECSICGLEFAIGQALGGHMRRHRVPSISNANMQSSITTLSCSVHTKRKKENSNKVLFLDLNLTPLENDMQIFKIRQTIPLLGSFI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0317 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Lal12g0317 168 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Lal12g0317 168 PANTHER ZINC FINGER PROTEIN ZAT5 1 154 - -
Lal12g0317 168 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Lal12g0317 168 SUPERFAMILY beta-beta-alpha zinc fingers 34 105 IPR036236 -
Lal12g0317 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Lal12g0317 168 PANTHER ZINC FINGER PROTEIN ZAT12 1 154 - -
Lal12g0317 168 Pfam C2H2-type zinc finger 83 106 - -
Lal12g0317 168 Pfam C2H2-type zinc finger 33 58 - -
Lal12g0317 168 Gene3D Classic Zinc Finger 32 106 - -
Lal12g0317 168 SMART c2h2final6 83 105 IPR013087 -
Lal12g0317 168 SMART c2h2final6 34 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0317 Lal-Chr12 2222814 2223320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0317 1 162 C2H2 Transcription Factor Family AT2G37430 41.104 1.04e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0317 zf-C2H2_6 2.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0317 - - pvu:PHAVU_008G014600g 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0317 12 2222814 2223320 Lal13g0294 13 1816778 1817314 ECH
Lal12g0317 12 2222814 2223320 Lal12g0317 12 2222814 2223320 ECH
Lal12g0317 12 2222814 2223320 Lal13g0294 13 1816778 1817314 LSH
Lal12g0317 12 2222814 2223320 Lal24g0237 24 1703725 1704225 LSH