Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0315 ATGGTTCTGTCCAACAAGAAGCTCAAAAATAAGCTCAGAGCTGAATCATCACTTATTCAAAACTCTCTACTATCTCTTCCCGACTCTGCCACGAAAAAAACTACACTCTCCAAGAGAGAGAAACTCCGAAAGCTGCGTTCTTTGAATCCTGTAGAGGCTAGTGCTAATGATGAATCAAGCAAGAAGGAAAATGGGTCTGAAGATTTGACCATTAAGAAGAAGAAAAACAACAAAAAGAGAAAGAGGAAACTCACTGAAGAAAATGGTGATGTGGCAGATGAAGATATCAAGGATTCCAACAACTCAAACAACACTACTAATAATAAGAAGAAGAAGATGAAAAAACCCAAAAACAATGAAGGGGAAGCGGTTCAGGTCACTGAGTTAACTAGTCAAGAGAATGGTGATGTGGCAAATGAGGTAAACAACAATGCCGACAAGTCAAAGAATAAGTCTAAGAAGAAAAATAAGAAGAAGAAGATTAAGAAGAAGGCCAAAAATAATGGAGAGGAAGTGGCTGAGAAAACTGAGCCGGCCACCGAGTTAACTACCACCTTTACTACCACTGCTACAAGTCAAGAGAGTGTTGAAGTTCCGACAAAAGTTTATGTGGGAGGAATTCCATATTATTCAACTGAGGATGATATTCGGAGTTATTTTGAAAGTTGTGGTACCATTACTGAAGTTGACTGCATGTATTTTCCTGAAACTGGCAAGTTTAGAGGAATTGCAATTATTAGTTTTAAGACTGAAGCGGCAGCAAAACGAGCGTTGGCTTTTGATGGATCTGACATGGGAGGATTCTTTCTGAAAATCCAACCATATAAATCTACTCGAGCCATTAAAGCACCAGATTTTGCTCCACAAATTTTGGAGGGATACAATAGAATATATGTTGGAAATTTGTCATGGGATATAACAGAGGAAGAACTGAAGAAATTCTTCTCCAATTGCAATATAACAACAGTACGTTTTGGTATGGACAAGGAAACCGGAGAATTCCGAGGGTATGCCCATGTGGATTTCAGTGATAGCGAGTCACTGAAAACATCGCTTACTTTGGACCAAAACATTTTGTTTGGGAGACCCGTCAAGATAAGTTGTGCAGTTCCTTTGAAGAAAAAATCAGGAACCAATACAAGCTCTGTTACTACAAGTAATCCTAAATCAGGAACCAATACAAGCTCTGTTGCTACAAGTAATCCTAAATCAGTTACAAATACAAGCTCTGTTGCTACAAGTAATCCTAAATCAGTAACAAATACAAGCTCTGTTGCTACTAGTAATCCCAAATCAGTAACAAATACAAGCTATATTGCTACAAGTAATTCTGAATCAGGAATCAATACAAGCTCTGTTGCTACAAGTAATCCTACAAGTCTTGGGTTGGATGCTGAGAAATCAACTTCCATTGCAAGTGGCAAGTTGAGGAGGCGGAAATGCTACGAGTGTGGTGAAAAAGGACATCTTCTCTCAGAATGCCCGAAGAATAAAACAGTCACTTCAACTACAACTTAA 1518 0.3854 MVLSNKKLKNKLRAESSLIQNSLLSLPDSATKKTTLSKREKLRKLRSLNPVEASANDESSKKENGSEDLTIKKKKNNKKRKRKLTEENGDVADEDIKDSNNSNNTTNNKKKKMKKPKNNEGEAVQVTELTSQENGDVANEVNNNADKSKNKSKKKNKKKKIKKKAKNNGEEVAEKTEPATELTTTFTTTATSQESVEVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPETGKFRGIAIISFKTEAAAKRALAFDGSDMGGFFLKIQPYKSTRAIKAPDFAPQILEGYNRIYVGNLSWDITEEELKKFFSNCNITTVRFGMDKETGEFRGYAHVDFSDSESLKTSLTLDQNILFGRPVKISCAVPLKKKSGTNTSSVTTSNPKSGTNTSSVATSNPKSVTNTSSVATSNPKSVTNTSSVATSNPKSVTNTSYIATSNSESGINTSSVATSNPTSLGLDAEKSTSIASGKLRRRKCYECGEKGHLLSECPKNKTVTSTTT 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0315 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 371 IPR000504 GO:0003723
Lal12g0315 505 MobiDBLite consensus disorder prediction 82 97 - -
Lal12g0315 505 Coils Coil 138 158 - -
Lal12g0315 505 MobiDBLite consensus disorder prediction 26 179 - -
Lal12g0315 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
Lal12g0315 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Lal12g0315 505 MobiDBLite consensus disorder prediction 56 73 - -
Lal12g0315 505 MobiDBLite consensus disorder prediction 123 145 - -
Lal12g0315 505 SMART rrm1_1 296 367 IPR000504 GO:0003723
Lal12g0315 505 SMART rrm1_1 201 273 IPR000504 GO:0003723
Lal12g0315 505 Pfam Zinc knuckle 479 496 IPR001878 GO:0003676|GO:0008270
Lal12g0315 505 SUPERFAMILY RNA-binding domain, RBD 196 278 IPR035979 GO:0003676
Lal12g0315 505 SUPERFAMILY Retrovirus zinc finger-like domains 474 500 IPR036875 GO:0003676|GO:0008270
Lal12g0315 505 MobiDBLite consensus disorder prediction 33 47 - -
Lal12g0315 505 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 103 502 - -
Lal12g0315 505 Gene3D - 291 381 IPR012677 -
Lal12g0315 505 MobiDBLite consensus disorder prediction 375 466 - -
Lal12g0315 505 Gene3D - 464 504 - -
Lal12g0315 505 SMART c2hcfinal6 480 496 IPR001878 GO:0003676|GO:0008270
Lal12g0315 505 CDD RRM2_PHIP1 296 367 IPR034362 -
Lal12g0315 505 ProSiteProfiles Zinc finger CCHC-type profile. 479 496 IPR001878 GO:0003676|GO:0008270
Lal12g0315 505 CDD RRM1_PHIP1 202 273 IPR034361 -
Lal12g0315 505 MobiDBLite consensus disorder prediction 150 164 - -
Lal12g0315 505 Gene3D - 124 285 IPR012677 -
Lal12g0315 505 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 103 502 - -
Lal12g0315 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 277 IPR000504 GO:0003723
Lal12g0315 505 SUPERFAMILY RNA-binding domain, RBD 288 379 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0315 Lal-Chr12 2212949 2215809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0315 200 444 Eukaryotic Initiation Factors Gene Family AT2G36660 25.651 4.71e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0315 - - lang:109346503 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0315 12 2212949 2215809 Lal12g0315 12 2212949 2215809 ECH