Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0310 ATGGCAAGGATCAAGGTTTACGAGTTGAGGCAGAAGACCAAAGCTGAGTTGTTGAACCAGCTCAAGGATCTTAAGGCCGAGCTCGCTTTGCTCCGCGTTGCTAAGGTCACTGGTGGAGCCCCCAACAAGCTCTCCAAGATAAAAGTGGTGAGATTGAACATTGCTCAGGTTTTGACCGTGATTTCTCAGAAGCAGAAATCTGCATTGAGGGAGGCTTATAAGAACAAGAAGTATTTGCCTCTTGATCTTCGCCCAAAGAAGACCAGGGCTATTCGCAGAAGGCTTACCAAGCACCAGCAATCGTTGAAGACCGAGCGTGAGAAGAAGAAAGAAACATATTTCCCATTGAGGAAATTTGCCATCAAAGTGTAA 372 0.4624 MARIKVYELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKSALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKETYFPLRKFAIKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0310 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Lal12g0310 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 123 - -
Lal12g0310 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lal12g0310 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Lal12g0310 123 Gene3D - 78 123 - -
Lal12g0310 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lal12g0310 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lal12g0310 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Lal12g0310 123 CDD Ribosomal_L29_HIP 8 64 - -
Lal12g0310 123 Coils Coil 7 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0310 Lal-Chr12 2193317 2194790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0310 1 123 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 87.805 4.90e-72 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0310 K02918 - gmx:100801539 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0310 12 2193317 2194790 Lal13g1113 13 8485346 8488837 LSH
Lal12g0310 12 2193317 2194790 Lal24g0228 24 1660140 1661852 LSH