Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0300 ATGGATAATTATATATGTCTTAGTTCATCGGATGATGATCTAGAGGAGATAGAAGATCCAAAGAGGTCTCTCCCACAATGGCCTGCTCCTGAAATGAATTCAGATAATGATGGGTGGTCTAAGCAGGGTAGTTCTTCAAGAGGAGCAAATACTTCAAACACAACCTCTTCTAATGTCAATAATCATTCACAAACCAGACCTCATACTCAACCCTCTTCCAACAACAATTCACTGAATCACAGAGTTGCACAAAGGGGTGAACCTTCCTATCGTTCTCAGAATGGAAACACAATTTTCAATACTTCTGGTTCTGATTATGAGAAAATGTCATCTCAACAAGCTTTCAAAAGGACCCTTCCATTATCTCTTCAGCCATCAGTAACAAAGGCTCTTCCATCTTCATCATTTGCACCAGATATCAGATCAAGCAACCTAAAAGATCACATGAGCAGCAGTCAATTTCATGATACATATAAGAATCGTCGCCATGGAATAGGGCCTAGCATGACTGGTGATAAGAGCCACATTCGTGAAAATTATAACAGAGGAAATGATGAAGATCGTCTTATGTTTCCAAATGGTGGGAGTAGGATTCTTCCTTCATCTTTGGCACATGGAAAGGCTATACATCCACACTTTGCTAGTTCCAGTGAAGCTGCATACCGTTCTGGGTCAGTTGATGAAAGGGCTTCTGCAACTGATGAGAGACTTATTTATGAGGCAGCATTGCAGGATCTCTATCGATCAAAGACGGAAACGGATTTACCTGATGGTCTAATGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTAGCTTGGATGCTTCAGAAGGAAACAAGAAGTTTGCATTGCTTGGGAGGTATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTTATCCTAATGCAGAAGTCATTGCAGTCAAAATCAAAAACAGATGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGATAATGGTATTGTTGATGTGGATAAGCTTAAAAAGAATGAAGAATCTGATGATATAAAACCTACCACAGAACCAAGCACTTCGACACGGGCACCAAGTAGGAAAAGGCCTGCTGCTGGTACGCTGGTTGTGTGCCCTGCAAGTGTTGTTCGACAATGGGCCAGGGAGCTTGATGATAAAGTTGGAAATGAGAAGCTTTCGGTTTTAATTTATCATGGGGGCAGTAGAACAAGAAATCCTGATGACCTTGCAACATATGATGTGGTTATCACAACATACGCTATTGTGACTAATGAAGTTCCAAAGCAACCGTTAGTGGACGAGGATGAAATTGATGAAAAAAATGATGAAAGATTTGGGTTATCTTCTGTGTTTCCTATAAGTAAAAAGAGGAAAAAGGCATACAATGGAAATAAGAAGAGTAAAAAGGGTAGAAAGGGAATTGACAACTCTCTCGATTGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGATTATTCTAGATGAAGCTCAAACAATCAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATCCAAAATACTATTGATGATCTGTATAGCTACTTTAGGTTCCTAAGGTATGATCCTTATGCTGTGTATAAATCATTCTACAATACAATTAAAATTCCAATATCCAGAAATTCTATCCATGGTTACAAGAAGCTTCAAGCAGTCTTGAGGGCCATAATGCTTCGTCGTACAAAAGGAACTTTGATCGATGGGCAGCCAATTATCAATTTGCCCCCTAAAACAATTGAGCTGACTAAGGTTGATTTCTCTGGGGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTGAATCAGAACTATGCAAATATTCTTTTAATGCTTCTACGACTACGTCAGGCTTGTGATCATCCACTTCTTGTCAAAGATTATAATTCCAATCCTGTCGGACAGGATTCTATTGAAATGGCAAAAAGGCTTCCAAGGGATTTGCTGATTAATCTATATAAGGAATTGGATACAACCTCTGCTATCTGCCATGTTTGCAATAGTGTCACGTATATTGTCGTTGGGGATCTTTGTCATATGGATGCACTTCCTGTGGATGTTGCTTACAAAGATCCACCTGAAGACCCTGTTATTACTATGTGTAGTCATGTCTTCTGTTATCAATGTGTATCAGACTTCTTGACAGCTGATAATAATACATGCCCCGCAGTTTATTGTAAAGAGACAGTTGGTGAAGATGTTGTTTTCTCCAAAACTACTTTGAGAAGCTGCATCTCTGATGATCTTGATGGCAGTAGTTCCTCAAATTCACATCATGTTGATTATTCACTATTTCAGGAAACTGAGTACAACTCGTCTAAAATCAAAGCTGTCCTTGAGATTCTGCAGTCAAATCGCAAAATGAAGGCTCCTAGTTCTGGCTCACCGAATTCCTCTGGAGGCCGTGGAGATTTACGGTCTTGTGATATTTCATTTATTGAAGATTGCGATTCAGATGTCCTGATTACAAAACACACAAGAAAATATTCAGAGCCCATCACCGAAGGTGCAATAAAGGCTATAATTTTTTCCCAATGGACTAGTATGTTGGACTTAGTCGAGGATGCATTGAAGCAATCTCAAACTCGTATACGATACAGGAGACTTGATGGTAGGATGACTCTACTTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTTATGCTTATGTCGCTAAAAGCGGGCAACCTTGGGTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAGGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTCACTGTGACACGGCTCACTATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAGATGGTTGCATCTGCTTTTGGAGAAGATCATGCTGGTGGTACAGCTACTCGCCTTACAGTGGATGATCTCAAATATCTTTTTATGGTCTAG 3120 0.4038 MDNYICLSSSDDDLEEIEDPKRSLPQWPAPEMNSDNDGWSKQGSSSRGANTSNTTSSNVNNHSQTRPHTQPSSNNNSLNHRVAQRGEPSYRSQNGNTIFNTSGSDYEKMSSQQAFKRTLPLSLQPSVTKALPSSSFAPDIRSSNLKDHMSSSQFHDTYKNRRHGIGPSMTGDKSHIRENYNRGNDEDRLMFPNGGSRILPSSLAHGKAIHPHFASSSEAAYRSGSVDERASATDERLIYEAALQDLYRSKTETDLPDGLMSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALILMQKSLQSKSKTDDACNHKTEALNLDDDDDNGIVDVDKLKKNEESDDIKPTTEPSTSTRAPSRKRPAAGTLVVCPASVVRQWARELDDKVGNEKLSVLIYHGGSRTRNPDDLATYDVVITTYAIVTNEVPKQPLVDEDEIDEKNDERFGLSSVFPISKKRKKAYNGNKKSKKGRKGIDNSLDCGSGPLAKVGWFRIILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYNTIKIPISRNSIHGYKKLQAVLRAIMLRRTKGTLIDGQPIINLPPKTIELTKVDFSGEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYNSNPVGQDSIEMAKRLPRDLLINLYKELDTTSAICHVCNSVTYIVVGDLCHMDALPVDVAYKDPPEDPVITMCSHVFCYQCVSDFLTADNNTCPAVYCKETVGEDVVFSKTTLRSCISDDLDGSSSSNSHHVDYSLFQETEYNSSKIKAVLEILQSNRKMKAPSSGSPNSSGGRGDLRSCDISFIEDCDSDVLITKHTRKYSEPITEGAIKAIIFSQWTSMLDLVEDALKQSQTRIRYRRLDGRMTLLARDKAVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDHAGGTATRLTVDDLKYLFMV 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0300 1039 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 40 1038 - -
Lal12g0300 1039 MobiDBLite consensus disorder prediction 129 151 - -
Lal12g0300 1039 Pfam SNF2-related domain 267 669 IPR000330 GO:0005524|GO:0140658
Lal12g0300 1039 Gene3D - 475 604 IPR038718 -
Lal12g0300 1039 Gene3D - 238 324 IPR038718 -
Lal12g0300 1039 SMART ultradead3 260 571 IPR014001 -
Lal12g0300 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 783 IPR013083 -
Lal12g0300 1039 CDD SF2_C_SNF 884 991 - -
Lal12g0300 1039 MobiDBLite consensus disorder prediction 1 104 - -
Lal12g0300 1039 MobiDBLite consensus disorder prediction 344 374 - -
Lal12g0300 1039 Pfam Helicase conserved C-terminal domain 884 981 IPR001650 -
Lal12g0300 1039 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 279 554 IPR014001 -
Lal12g0300 1039 MobiDBLite consensus disorder prediction 152 168 - -
Lal12g0300 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 592 IPR027417 -
Lal12g0300 1039 SUPERFAMILY RING/U-box 735 791 - -
Lal12g0300 1039 Gene3D - 358 447 IPR038718 -
Lal12g0300 1039 ProSiteProfiles Zinc finger RING-type profile. 708 767 IPR001841 -
Lal12g0300 1039 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 877 1034 IPR001650 -
Lal12g0300 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 1038 IPR027417 -
Lal12g0300 1039 MobiDBLite consensus disorder prediction 129 193 - -
Lal12g0300 1039 Gene3D - 785 1038 IPR027417 -
Lal12g0300 1039 CDD DEXDc_SHPRH-like 264 592 - -
Lal12g0300 1039 ProSitePatterns Zinc finger RING-type signature. 746 755 IPR017907 -
Lal12g0300 1039 SMART helicmild6 896 981 IPR001650 -
Lal12g0300 1039 MobiDBLite consensus disorder prediction 29 104 - -
Lal12g0300 1039 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 40 1038 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0300 Lal-Chr12 2101870 2111996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0300 1 939 RAD5 or RAD16-like Gene Family AT1G50410 54.395 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal12g0300 SNF2_N 2.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0300 - - lang:109335781 1769.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0300 12 2101870 2111996 Lal12g0300 12 2101870 2111996 ECH
Lal12g0300 12 2101870 2111996 Lal13g0265 13 1658831 1666963 LSH