Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0295 ATGTCGGAACCACCGTACTGGTGTTACCACTGCGACAAACGCGTCTCCACCGAAACCCTCCCCAACCTCACCGACGTCATTTGCGGCGATTGCAATAACGGCTTCGTCGAACTCATCCCTACTCCCACCACTCTCGATATTCCCTCTCTTTCTCCTTCTGATTCCGATGATCCTTATTTCGCTTCTCACTTCCTCCACCTCCTTCACCTCATCTCTCATTCCGCGCGTGACGACGACGCTTCTCCCCCTCCTCCTCCAACCCGCTCTCCTGATAACGATTTCCTCAGGATCGAGCTTGGTGCCTTGGATAACGAAGAAGATGAAGAAGACGATGACGACGAAGAAGAAGAACACGAAGATCGAATTGACAACGTTGATCTTCCTGGAGATGACGATGATTTGAGCCGTAGGAGGCGCGAGGTTCTTCGTCTTCGAATTAGGGATTTGGCATCGCGAACGAGGAGCATGAGGAACCGGATCTTGGATTGGCCTGGTATTCTCACGGGTATGGAAGACAATTCAATCGAATTCCGTCTTCAGGCACCGGAATCCGACCGTTACGTTGGGAATCCTGAGGATTATGTTGACGCGGCTGAGTTTGATGCGTTGCTTCAGACTCTGGCGGAGACAGACGGTGGTGGGAAGAGAGGAGCACCGCCGGCGGCTAAGTCAGCGGTTGAGGCGTTGCCAACAGTGGAGATAATGGCAGAGAAGGAGGCTGTGGCGTGTGCCATATGTAAGGATATGGTTGGTGTTGGTGGCGTGGCGAAGAGATTGCCATGTGGGCATCAGTACCATGGAGATTGCATTGTTCCTTGGTTAGGTTCTCGAAATTCTTGCCCAGTTTGTAGGTTTGAGCTTCCGACTGATGATAAGGAATATGAACAACAGAGGAAGAATAAGAAGGTAATGAATAGTTCTTCTGATGAAGCTTCCGGTTCGGGTTGA 948 0.5116 MSEPPYWCYHCDKRVSTETLPNLTDVICGDCNNGFVELIPTPTTLDIPSLSPSDSDDPYFASHFLHLLHLISHSARDDDASPPPPPTRSPDNDFLRIELGALDNEEDEEDDDDEEEEHEDRIDNVDLPGDDDDLSRRRREVLRLRIRDLASRTRSMRNRILDWPGILTGMEDNSIEFRLQAPESDRYVGNPEDYVDAAEFDALLQTLAETDGGGKRGAPPAAKSAVEALPTVEIMAEKEAVACAICKDMVGVGGVAKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDKEYEQQRKNKKVMNSSSDEASGSG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0295 315 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Lal12g0295 315 MobiDBLite consensus disorder prediction 102 133 - -
Lal12g0295 315 Pfam zinc-ribbon 6 39 IPR039525 GO:0061630
Lal12g0295 315 MobiDBLite consensus disorder prediction 102 121 - -
Lal12g0295 315 SMART ring_2 243 283 IPR001841 -
Lal12g0295 315 Pfam Ring finger domain 243 284 IPR001841 -
Lal12g0295 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 290 IPR013083 -
Lal12g0295 315 SUPERFAMILY RING/U-box 238 290 - -
Lal12g0295 315 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 22 314 - -
Lal12g0295 315 MobiDBLite consensus disorder prediction 294 315 - -
Lal12g0295 315 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 22 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0295 Lal-Chr12 2075535 2076482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0295 154 300 C3H Transcription Factor Family AT5G01980 46.753 9.42e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0295 - - lang:109346529 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0295 12 2075535 2076482 Lal24g0210 24 1526126 1527160 LSH