Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0288 ATGTCTAACTCTGACGGCACCCTTAACGGCGTCACTAACAACAACACCAACACCCTCTCCGTCAAGAAACCACCTTCCAAAGACCGTCACAGCAAGGTTGACGGCAGAGGCCGCCGCATACGCATGCCAATCATATGCGCCGCACGTGTCTTCCAACTCACACGTGAGTTAGGTCATAAGTCTGATGGTCAAACCATCGAGTGGCTCCTCCGTCAAGCTGAACCGTCAATCATCGCCGCCACCGGCACCGGTACAACTCCGGCAACCTTATCCTCTCTCTCTGTTTCACTCCGTGGAGTGTCTAACTCATTCTCTTCCCCTTCCTCTACCTCTCATCATAAAACCCTTCTCACTACCACTCCCTTCATTCTCGGGAAGCGTATTCATACCAATGATGATGATGCTTCTGTAACTGCAAAAAACGACGCCGTTTCGGGTGGGTCTTTTCTAGGCTCTGCTTCTCCGGCTGGATTGTGGGCCCTACCCGCGAGGCCTGATTTTGGACAGATTTGGAGCTTCGCGGCGGCTCCTCCGCCTGAGATGGTGTCTGTTTCTCAACAGCAACAAACTTCTTTCTTCCTTCATCAGCAGCAGCAGCAACAAGTGGCTATGGGAGAAGCTTCTGCTGCGAGGCTTGGGAATTATCTTCCTGGCCATCTCAATTTACTAGCTTCGTTGTCCGGAGGGCATGGAAATTCTGGTCGGAGAGACGATGAACAACATTGA 726 0.5193 MSNSDGTLNGVTNNNTNTLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATLSSLSVSLRGVSNSFSSPSSTSHHKTLLTTTPFILGKRIHTNDDDASVTAKNDAVSGGSFLGSASPAGLWALPARPDFGQIWSFAAAPPPEMVSVSQQQQTSFFLHQQQQQQVAMGEASAARLGNYLPGHLNLLASLSGGHGNSGRRDDEQH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0288 241 MobiDBLite consensus disorder prediction 1 35 - -
Lal12g0288 241 MobiDBLite consensus disorder prediction 1 22 - -
Lal12g0288 241 Pfam TCP family transcription factor 26 121 IPR017887 -
Lal12g0288 241 ProSiteProfiles TCP domain profile. 26 80 IPR017887 -
Lal12g0288 241 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 238 IPR005333 GO:0003700
Lal12g0288 241 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0288 Lal-Chr12 2056360 2057085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0288 9 239 TCP Transcription Factor Family AT5G23280 64.378 3.68e-95 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal12g0288 TCP 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0288 K16221 - gmx:100799005 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0288 12 2056360 2057085 Lal13g0255 13 1605582 1606307 LSH