Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0285 ATGGAGAACGATAACAACGTGAACAACAACAAATCAAATCCTGAAGGAGAAGGTATCAAATCGAACAACCACATCGAAGAAGATCACAATTCCAATTTGAATATTCCTGAGGAACACATGATTGAGCAAGATGATTCTATTGCTATTGATGATGAAGCTTCACTACAAGGCGCTGTAAATGAATCTGGTTCTGGTTCCGCTCCTCGTCGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTAGCCCTTGCCCGAACCCTTCAGGAGCAGGAGAGGGCGTACATGATGCTTAGAATGAATAATGATGGAAGTGATTATGGGAGTTGGGAAAGTGGAAGTTATTTGCATGATGATGATTTTGATGATCTGCATGATGCTACTGCTGTTGATGAGGACGGGGATGGGGATGGGGATGGGGATGAGGATGAGGATGAGGATGAAGACGATGTTGATGATGATGAGGAATTCGAGGATGAAGATGCGTTTGATGTCCTTGCTCATGCTGCTAGTGGACAACATGAAGTTTCGAGGATTCAATTTGACCCTGCTGTATTTACAAGCGATGAAGCATTTGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCTGCTAGACTCTTGGCTCTGGCTGGTATAAATGATCGAGAGGCTGATGATGCAGAGGAGCATGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTGGCCTTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCTGGGTTGCCTTCGGTTAACTACAAGACTGGTGGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGCCGTGTGGACTATGAGGATGGTGAGTCCTTAACAGTTCTTTCCTGCAAGCATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGCAGTACTGAGGTGTCTACTCCTGGAAATTGA 1011 0.4471 MENDNNVNNNKSNPEGEGIKSNNHIEEDHNSNLNIPEEHMIEQDDSIAIDDEASLQGAVNESGSGSAPRRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWESGSYLHDDDFDDLHDATAVDEDGDGDGDGDEDEDEDEDDVDDDEEFEDEDAFDVLAHAASGQHEVSRIQFDPAVFTSDEAFARALQEAEEREMAARLLALAGINDREADDAEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGGDQHGSNDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSTPGN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0285 336 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 10 335 IPR043312 -
Lal12g0285 336 MobiDBLite consensus disorder prediction 126 158 - -
Lal12g0285 336 SMART ring_2 287 327 IPR001841 -
Lal12g0285 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 334 IPR013083 -
Lal12g0285 336 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Lal12g0285 336 SUPERFAMILY RING/U-box 280 334 - -
Lal12g0285 336 MobiDBLite consensus disorder prediction 1 19 - -
Lal12g0285 336 MobiDBLite consensus disorder prediction 1 78 - -
Lal12g0285 336 Pfam Ring finger domain 285 327 IPR001841 -
Lal12g0285 336 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 10 335 - -
Lal12g0285 336 MobiDBLite consensus disorder prediction 57 78 - -
Lal12g0285 336 MobiDBLite consensus disorder prediction 20 43 - -
Lal12g0285 336 MobiDBLite consensus disorder prediction 122 158 - -
Lal12g0285 336 CDD RING-H2_PA-TM-RING 287 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0285 Lal-Chr12 2035163 2042426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0285 59 231 C3H Transcription Factor Family AT3G19910 48.087 3.27e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0285 K19045 - gmx:100787418 420.624