Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0282 ATGGTTCGCCGCAGCAAGTGGCGATGGAACGCTCCACGCACCGGCGGCGTCGAAACCATTCCCATCGTTACTGTTGAGAACGGTGACGGTTCGTGTTCAGAAGGGTTAGAAACTAATGAAGATAATTCAGGAGGAGTAAGTGATTATTCCGATCAAACTAAAGTTCGGAAAAAGAACCCATTCGGAAAGAGTAACGAGGAGAGTTTGAAGAATCATGGGTCCAAACATAACCAAGAAGGAAAAAAAGATAGTGTTTTGAATAAGCGCGGTAGAAAAAGAAAAATCTTTGACAAAGATGAAGCTAGTGATTCAATGGCAGAAGATCAAGCTAATGGGGAATCTCAAAACCCTTCAGAAAGTTCCATTCAGAGACGTACCTTAAGAAATCTTCCTAGACCCAGTAATAAACAGGATATGCCAAAATTGAAGAGAAGCGTTAAATTTACAGAAGAAGAATGCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCGAGGTTGTGAGGTGCACACTTTGTAAGCGCAAGAGATATTGCTTGTCATGCTTGCGCAAATGGTATCCTGAATGGAAATATGATGATGTTGCTGAGGCATGCCCTGTGTGCCGTGGCAATTGCAATTGCATAGCATGCATGCGGTCTTATACACATTTTGAGAAAATGAAGAGAGATGTGTGTAAGAAGAGGTATGAAGGTGATGATGATAATCTCTCTAAGTATGTAATGTTGTGGCTCCTTCCATATGTAAGACGATTGAATGAAGAACAGATGTCTGAGTTGGGGATAGAAGCTAAGAGACAAGGGCTCTCACTCTCAGAGCTTAATATTGAAAAGGCAGAATACTCACGGAAACATTCATATTATTTAGTTGCTGACTTAATGCTCTTTTGTAGTGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGTACAAAATGTTCTTTTCATCTTTGTCTCACCTGTTGCCATGAGCTTCGTGATGGACAGCTTCTAGGTGGTGCAGATCCAGTTGAGTTGGAGTTCATCAAATGTAGTCTCGAGTATTTGCATGGTGGAAAAGAAAAGGAAAAGGAGCCTGAGATACATGAATCAGCTGCTGATGCTGAGCCTGACATTCGTGGATGGTCAAGATCTGGGTGGCATGCCGAAGGTGATGGTAGGATTTCCTGTCCAAAGATCAACGATGAGTGCTGCCATGGTTTTCTTGAATTGAAAAGCATATTTGGCCAGGCTTTTGTTTCAGAGTTAGTATATAAGGCAGAAGAACTAGCAAATGCATGTACACTTCAAAATGCAATTGAGACTCCTGACAACTTTTGTTCTTGTTTAAAGATCAGTAGAAACACATCTGTTAGAAATAATATAAGGAAGGCAGCTTCTCGTGAAGATTCCAGCGACAACTGGTTATACTGTCCTAGGGCTGTGGATTTACAACCGGTGGATTTAAAGCATTTTCAATGCCACTGGATCAAAGGGGAGCCCGTCATTGTCAGCAATGTGCTTGAATGTACATCAGGTTTGAGCTGGGAGCCACTAGTGATGTGGCGTGCATTCCGTAAAATTAGTACTACCAAGTATGGTAAACATTTGGATGTGAAGGTCTTGGATTGCTTAGATTTGTGCGAGAAAGATATCAATATGCATCAATTCTTTATTGGGTATACAAATGGTCGTTATGATTGGCTTAATTGGCCTCAGATACTGAAATTGAAAGATTGGCCTCCGTCCAATTTATTTGTGGAACATTTACCTCGTCATTGTGCCGAGTTCTTATCTTCCTTGCCCTTTAAAGGATATACAGATCCTCTCGGAGGTGCTCTTAACCTCACTGCCCTTAACTCCTTTGATCTTAAATATTCAAAGGCAGACATGGGGCCAAATACATTTATTGCTTATGGAGTTAGTCAGGAGCTTGGACGTGGTGACGCTGTGACTAAGCTTCACTGTAACATGTCTGATGCAGTAAATGTGTTGGTTCATATTGCCAATGTGGAATTGTGGCCTAAACATCTCACTGCCATTGATAAGTTGAAGCTAAAGCACCTCGAGCAAGACAAGAGGGAGCTACTTCAAGATGATCAGGAGGGAGAAAGTAATGATGGGTTGCGTAGTAGTTCATCCTCTACTGTAGATGGTCTTTCATATGGGGAGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGAAGACAGGATGTACCTAAATTGCAGGAATATCTAAAGAAGCATTTTAGAGAGTTTAGGCATGTCCACTGCCGTCCTGTAAAGCAGGTTATTCATCTCATCCATGACCAGACTATGTATTTGACGCTGGAGCATAAGAGGAAGCTAAAGGAGGAGTATCGGATTGAGCCCTGGACTTTTATTCAGAAGTTGGGAGATGCTGTTTTAATTCCAGCGGGCTGCCCTTACCAAGTCAGAAATCTTAAGTCATGCATCATGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGTTTCCGTTTGACAGAGGAGTTTCGCACACTTCCAATAAATCACATGTTTTCGAAGGACAGATTGGAGGTGAAGAAAATGACAATACTTGCTATGCATAACATGGTTAAAAAAATGGAGAAAGCAAGTGTAGCGAATGCGAGCTTCAAGCCTTATGTGCATCCATTGCGAGATGCTGATCTTGCACTTTCAACTTCGAAAGAGCAAGAGAAGAAGGTTCCAACCCCTGCGGCAGTTTATGAAACTTTTGAGCAGCCCGATCTTTCTTCAAAGGAAAGTAAATCTTTTGTCACCCCCTCTGCTTCCAACCACTCCTTTCTCAATATCGATGTTGCTGAGGATGAAGCCATACAATCTATTCAAGCTCCTGAGGCTGTTGAAACATCTTCTGCCTCCCTTGTCCAAACTGCCATAAAAAAGGGGCATATGGTTCCTCCAGCTCCTCTATGGGACATGGTTTATGCAGCTATGGATGAATCCCTTCAATTAGAGCCTACTATCAAAGCTCTGTCAGATGATGCTGCTGGCCTCGCTCCTCATTCCCCTTCAGAAAGAACTGAAAATCCTATTGTTCCTGGATATGATCCATTGGCAGAGCTGGACCGCATGCTCTCAAGCAGCCAAAAACATTCCTCTTTGTCTGCAAAGTCATTTACCTGCACTGGAGAAGACTCTAGTGAATTCAAAGTGGTCAAACTCCTCGAATACCTTGAGTCAACAATCTCTTGCCCGCTCAACCAGTTAGCTACTGACAAGAGCCTCCAGGAGCGCCTCTACTCTCTCCTTGGCCAATTGAGGAAGCATCCTGCCAGCCTTCCTTCATCGCTTCGACAATTGCCCATCCTTATGAAGGCATCTCTTGGAGACCTAGTTGTTCAGTATCCAGCACTTCGAAGTACCATTGAGTCTCAAGAAAGGAGACTGAAAGATAAAGAGGAATATTCCAAACTGTTGGTCAAAACTAAGAATCGTCAAATTCATCTTGATACCAACATCAACAAAGGCATTTTCGATGTCTCGACTCTGGACAAGCAAATTGCTAACTTTGAACAAAAGCTCATTGAAATGAAGGCCCAGAGAGAAAAGATCCACATCTGCCTTGTCAAACATGAGGGAGAGAAGAAGAAGCTATTGGAAACTGCTGGTGTCTGGGTGGAAGAAACAAGAAGAATTATGTCGGCCATCAACGAGGCCACCGAGGACTATGATGAAGCCCTTTCGATTGAAGCAATCTATGCTCAGATGTGGGAAGGCTTCAAAAAAAACCTGGCTGATGTGAATTCTGCTTGA 3777 0.426 MVRRSKWRWNAPRTGGVETIPIVTVENGDGSCSEGLETNEDNSGGVSDYSDQTKVRKKNPFGKSNEESLKNHGSKHNQEGKKDSVLNKRGRKRKIFDKDEASDSMAEDQANGESQNPSESSIQRRTLRNLPRPSNKQDMPKLKRSVKFTEEECLMCHQCQRNDKGEVVRCTLCKRKRYCLSCLRKWYPEWKYDDVAEACPVCRGNCNCIACMRSYTHFEKMKRDVCKKRYEGDDDNLSKYVMLWLLPYVRRLNEEQMSELGIEAKRQGLSLSELNIEKAEYSRKHSYYLVADLMLFCSDNCKTSIFDYHRSCTKCSFHLCLTCCHELRDGQLLGGADPVELEFIKCSLEYLHGGKEKEKEPEIHESAADAEPDIRGWSRSGWHAEGDGRISCPKINDECCHGFLELKSIFGQAFVSELVYKAEELANACTLQNAIETPDNFCSCLKISRNTSVRNNIRKAASREDSSDNWLYCPRAVDLQPVDLKHFQCHWIKGEPVIVSNVLECTSGLSWEPLVMWRAFRKISTTKYGKHLDVKVLDCLDLCEKDINMHQFFIGYTNGRYDWLNWPQILKLKDWPPSNLFVEHLPRHCAEFLSSLPFKGYTDPLGGALNLTALNSFDLKYSKADMGPNTFIAYGVSQELGRGDAVTKLHCNMSDAVNVLVHIANVELWPKHLTAIDKLKLKHLEQDKRELLQDDQEGESNDGLRSSSSSTVDGLSYGEDASDGALWDIFRRQDVPKLQEYLKKHFREFRHVHCRPVKQVIHLIHDQTMYLTLEHKRKLKEEYRIEPWTFIQKLGDAVLIPAGCPYQVRNLKSCIMVALDFVSPENVGECFRLTEEFRTLPINHMFSKDRLEVKKMTILAMHNMVKKMEKASVANASFKPYVHPLRDADLALSTSKEQEKKVPTPAAVYETFEQPDLSSKESKSFVTPSASNHSFLNIDVAEDEAIQSIQAPEAVETSSASLVQTAIKKGHMVPPAPLWDMVYAAMDESLQLEPTIKALSDDAAGLAPHSPSERTENPIVPGYDPLAELDRMLSSSQKHSSLSAKSFTCTGEDSSEFKVVKLLEYLESTISCPLNQLATDKSLQERLYSLLGQLRKHPASLPSSLRQLPILMKASLGDLVVQYPALRSTIESQERRLKDKEEYSKLLVKTKNRQIHLDTNINKGIFDVSTLDKQIANFEQKLIEMKAQREKIHICLVKHEGEKKKLLETAGVWVEETRRIMSAINEATEDYDEALSIEAIYAQMWEGFKKNLADVNSA 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0282 1258 SUPERFAMILY Clavaminate synthase-like 480 856 - -
Lal12g0282 1258 Gene3D Cupin 471 847 - -
Lal12g0282 1258 Coils Coil 681 701 - -
Lal12g0282 1258 ProSiteProfiles JmjC domain profile. 574 838 IPR003347 -
Lal12g0282 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 697 872 - -
Lal12g0282 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 36 692 - -
Lal12g0282 1258 Pfam JmjC domain, hydroxylase 712 821 IPR003347 -
Lal12g0282 1258 MobiDBLite consensus disorder prediction 107 133 - -
Lal12g0282 1258 MobiDBLite consensus disorder prediction 692 717 - -
Lal12g0282 1258 MobiDBLite consensus disorder prediction 702 716 - -
Lal12g0282 1258 ProSiteProfiles Zinc finger RING-type profile. 153 203 IPR001841 -
Lal12g0282 1258 CDD cupin_RmlC-like 741 822 - -
Lal12g0282 1258 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 36 692 IPR045109 GO:0032454|GO:0033169
Lal12g0282 1258 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 697 872 IPR045109 GO:0032454|GO:0033169
Lal12g0282 1258 MobiDBLite consensus disorder prediction 31 50 - -
Lal12g0282 1258 Coils Coil 1168 1188 - -
Lal12g0282 1258 MobiDBLite consensus disorder prediction 25 142 - -
Lal12g0282 1258 MobiDBLite consensus disorder prediction 51 105 - -
Lal12g0282 1258 SMART cupin_9 585 838 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0282 Lal-Chr12 2014258 2025935 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal12g0282 JmjC 2.4e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0282 K15601 - gmx:100780803 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0282 12 2014258 2025935 Lal13g0487 13 3159019 3161259 LSH