Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0280 ATGGTAATTCAGGTTAACAACCACAGCACCGGCACCGCAATGCATCACCATGCTACGGCGGCGCAATCCACCCGACAGCGACGGAAGCTAGAAGTGTACAATGAGGTTCTCCACCGCCTCAAGGATTCCGGCAACGAAGAAGCTTTACAACCTGGCTTCGATGATCTGCTTTGGGCTCACTTTAACCGCCTCCCTACACGGTATGCGTTGGATGTGAATGTTGAAAGGGCTGAAGATGTTCTTACGCACAAGAGATTACTGCATTTGGCTCATGATCCTGCTAACAGGCCTGCAATTGAAGTTCGATTAGTCCAGGTTCATCCTGTCTCGAGTGGAAACTCAGCTGACTCTGTCCTATCAGATGCTCCTGTGAATGAATCTGACCAAAGTTCTTCAAAGTTCTCAAACAGACAGGGTTTACATCCACCACCTGCTTTTGGTTCTTCTCATAATCTTGAAGCACTAGCACTTGAAGCAAATAATTCTAAAGACATGGAGGAGGAACAATCTGTGCATGCTAGTGCAAACTATTCACGGCCCATGCACGAAATTACCTTCTCAACAGATGACAAGCCAAAGCTTCTTAGTCAGTTAACTGCTTTGCTTGCGGAGATTGGACTGGACATCCAAGAGGCGCATGTCTTCTCCACAGCTGACGGTTACTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAGAAGCTTAAAGCAACTTTGGGAAAACAAGTCTTAATGATTGAGTGCTTTCAGAGGCAGGCAAGGTCGGATCAGCAATCAGAATCTTCTGCTGAGAAGCCTGATCAAGCAGAGGTGAAATGTGAACCTGACCAGTTGACAATACCTAATGACGGGATGGATGTTTGGGAAATAGATCCTAAACATTTGAATTATGGAACTCAAGTCGCATCTGGGTCATACAGTGAACTATTTAAAGGTGTATATTGCAGCCAAGAAGTAGCCATTAAAGTTCTCAAGCCAGAGCATTTAAGTTCAGATTTGCAGAGAGAGTTCGCGCAGGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATGGGAGCATGCACTAAACCCCCACGCTTGTGCATAGTTACAGAATTTATGTCTGGTGGTAGCGTGTATGACTACCTGCATAAGCAGAAGGGTTGCTTTAAATTTCCTACCCTGCTCAGAGTTGCAATTGATGTTTCTAAAGGAATGAACTACTTGCATCAACATAACATACTCCATAGAGACTTGAAGGGTGCCAATCTTTTGATGGATGAAAACGGTGTTGTAAAGGTTGCTGATTTCGGTGTAGCTAGAGTGAAAGCTCAATCTGGAGTTATGACAGCAGAAACTGGAACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCCTATGATCACAAGGCAGATGTATTTAGTTTTGGAGTTGTTTTATGGGAATTGCTAACTGGAAAGCTTCCATACGAATACCTGACCCCTCTCCAGGCTGCTATAGGAGTGGTTCAAAAGGGTCTACGACCAACCATCCCTAAGAACACCCATCCAAAGTTTGTTGAGCTTCTTGCGAGGTCTTGGCAGCAAGATCCAGCATTGAGACCCGATTTCTCTGAGATTATTAATATCCTGCAGCAGTTAGCCAAAGAGGTTGGAGGTGACGGAGAGGAGCGACGTAGGGATAAGTCGGGAGGGTTTCTGTCTGTCCTCAGACGAGGTCATCACTAA 1740 0.45 MVIQVNNHSTGTAMHHHATAAQSTRQRRKLEVYNEVLHRLKDSGNEEALQPGFDDLLWAHFNRLPTRYALDVNVERAEDVLTHKRLLHLAHDPANRPAIEVRLVQVHPVSSGNSADSVLSDAPVNESDQSSSKFSNRQGLHPPPAFGSSHNLEALALEANNSKDMEEEQSVHASANYSRPMHEITFSTDDKPKLLSQLTALLAEIGLDIQEAHVFSTADGYSLDVFVVEGWPYEETEKLKATLGKQVLMIECFQRQARSDQQSESSAEKPDQAEVKCEPDQLTIPNDGMDVWEIDPKHLNYGTQVASGSYSELFKGVYCSQEVAIKVLKPEHLSSDLQREFAQEVYIMRKVRHKNVVQFMGACTKPPRLCIVTEFMSGGSVYDYLHKQKGCFKFPTLLRVAIDVSKGMNYLHQHNILHRDLKGANLLMDENGVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLARSWQQDPALRPDFSEIINILQQLAKEVGGDGEERRRDKSGGFLSVLRRGHH 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0280 579 PRINTS Tyrosine kinase catalytic domain signature 373 386 IPR001245 GO:0004672|GO:0006468
Lal12g0280 579 PRINTS Tyrosine kinase catalytic domain signature 410 428 IPR001245 GO:0004672|GO:0006468
Lal12g0280 579 PRINTS Tyrosine kinase catalytic domain signature 456 466 IPR001245 GO:0004672|GO:0006468
Lal12g0280 579 PRINTS Tyrosine kinase catalytic domain signature 475 497 IPR001245 GO:0004672|GO:0006468
Lal12g0280 579 PRINTS Tyrosine kinase catalytic domain signature 519 541 IPR001245 GO:0004672|GO:0006468
Lal12g0280 579 Pfam Protein tyrosine and serine/threonine kinase 300 548 IPR001245 GO:0004672|GO:0006468
Lal12g0280 579 SUPERFAMILY ACT-like 181 245 IPR045865 -
Lal12g0280 579 SMART serkin_6 299 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0280 579 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g0280 579 MobiDBLite consensus disorder prediction 112 147 - -
Lal12g0280 579 CDD STKc_MAP3K-like 305 548 - -
Lal12g0280 579 Gene3D Phosphorylase Kinase; domain 1 288 377 - -
Lal12g0280 579 Gene3D Transferase(Phosphotransferase) domain 1 378 566 - -
Lal12g0280 579 MobiDBLite consensus disorder prediction 1 26 - -
Lal12g0280 579 ProSiteProfiles ACT domain profile. 183 261 IPR002912 -
Lal12g0280 579 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 15 560 - -
Lal12g0280 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 15 560 - -
Lal12g0280 579 MobiDBLite consensus disorder prediction 112 138 - -
Lal12g0280 579 SUPERFAMILY Protein kinase-like (PK-like) 285 548 IPR011009 -
Lal12g0280 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Lal12g0280 579 ProSiteProfiles Protein kinase domain profile. 299 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0280 Lal-Chr12 1993122 2000126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0280 9 578 MAP Kinase Kinase Kinase AT4G35780 65.149 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal12g0280 PK_Tyr_Ser-Thr 1.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0280 - - gmx:100805180 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0280 12 1993122 2000126 Lal12g0280 12 1993122 2000126 ECH
Lal12g0280 12 1993122 2000126 Lal13g0250 13 1584361 1592106 LSH