Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0278 ATGCAATCTAGTATAAGAAAATCATTCAAATCCTATGCTTCATATAGTAATAACCTTTCTAGAAGGTTCTCACTTACCGGAAACGCTGACTCATCCTCCTCCGATCCTGAAAATCTTCCAATCCTCCTCCATCAAGACAATAACAACCCTTTTCCTCCGTCCTCTATGGCGGCCGGAGGTGATTTTGTTGTTAAGATTAACGACGCTGATCCCTCTGTTGTTTCTCCATCCATTTGGAGAGAATCAAGCTACGATTTCTGGAATGATGATAGCACCACTGATGAACGAGATAATGCAAATCAGGACAGCTTCGATTTTCGCCATAAAGCTCAGTTGTCGCCGGAGAAGGATCCACCGTCGCGGCTCATTGGCAAGTTTTTGCATAAGCAGAGAGCTTCCGGTGAGATTTCGTTGGATATGGATTTGGAAATGGACGAGCTGCAGCATGATTCCGCCGACGGGAACCTCACTCCGGTTGAAGAGTCGCCGACGGTGAACCATTACCGTATCTCAAGGGATATTAAGGTTTCGTTCGAGGAACCTCCTCCGAACTTGGTTGAGTTAGCAAACGATTATGCCGTTAGAAGAAGGAATAGCAAGGATTCACCGTCGATCGGAGAGTTTCAACGGCCGCCGAAACATGATCGTCGTGGTGGATCTCCGTCACCATCCGGTGACGGTGAGGTTTTGAGGTGCACTTCAAATGCTTCATTTGAAAGGAACCTTTCTATGCAGAGAAGGAGTTCGTTATTGAAGGCAAAAACCCGGTCCAGATTGTTAGACCCGCCGGAAGAGCCTGATAAGAAATCGGGTCGGGTACCGGGATCGGGTCAGATGTTCTCCGGATTTATGGGAAAGAAGGGTGGAGATGATGATGATGATGATCCTTTTCTGGAAGAGGATCTTCCAGATGAGTATAAAAAGACTCGTTTCAGCTTTTGGATTTTGCTTGAATGGTTGAGCTTGATTTTGATCATTGCTTTATTAATAACCACTCTTAGTATTCCTCTTTTGAGGAACAAGCATCTGTGGCAGCTTAAGTTATGGAAATGGGAAGTAATGATTTTGGTTTTGATATGTGGTAGGTTGGTTTCTGATTGGGTGATTAGAATAGCTGTGTTTTGTATTGAGAGGAATTTCCTTCTGAGGAAGAGAGTGTTGTATTTTGTGTATGGTGTGAAGAAAGCAGTGCAGAAATGTGTGTGGTTGGGTCTTGTTTTGATTGCTTGGCACTTGTTGTTTGATAAGAGAGTTCAGAGGGAAACTAATAGTTCATTCCTTGAATATGTGACTAAGATTTTGGTGTGCTTCTTGGTGGGTACTGTGGTGTGGTTGGTGAAAACCCTTATGGTTAAGGTGCTTGCTTCTTCTTTCCATGTTAGTACCTACTTTGATAGGATTCAGGAGTCACTGTTTAATCAGTTTGTGATTGAAACACTCTCGGGGCCGCCTTTGATTGAACTTCAAAAGGCTGAAGAAGAGGAAGAGAAGCTTGCTGATGAGGTTCAGAAGCTGCAGAATGCTGGGGTTACCATACCTCCTGGTCTTCGGGCAACTGCTTTCTCTACCATCAAGAGTGGAAGGTTGAGGAGTGGAGTGCTCCAGAGAAGCCCTATTATTTCGCGTCCGCTTTCGAAGAAGTCAGATGATGGGAGTGGCGGAATAACTATTGATCATCTGCATAAGCTGAATCCGAAAAATGTTTCTGCTTGGAATATGAAAAGGTTGATTAATATGGTCCGGCATGGGGCTCTTACTACATTGGATGAGCAAATACTCGGGTCAGCTAATGAGGATGAGAATGCCACACAGATTAGAAGTGAAAATGAGGCCAAAGCAGCAGCAAAAAAAATATTTCTGAATGTTGCCAGGCGCAGTTGCAGGTATATATGCCTGGATGACTTGATGCGTTTTATGCGAGAAGATGAAGCTGAAAAAACATTAACACTCTTTGAAGGAGCATCTGAAAGTGGGAAAATCAGCAAACCAGCCTTGAAGAACTGGGTGGTCAATGCCTTCCGAGAGAGGAGAGCACTTGCTCTGACATTGAATGATACCAAAACGGCAGTGAACAAACTTCATAGGATGCTCAATTTCTTAGTTATACTGATCATAGTGATTATTTGGCTCTTGATATTAGGAATCGCCACCACCAAATTTCTTCTCTTTCTGAGCTCACAGGTTGTCTTGGTTGCATTTATATTTGGAAATACCTGCAAGACCATATTTGAATCAATTATTTTCTTGTTCGTCTTGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTCCAGATGGTTGTAGAAGAGATGAACATATTAACAACCGTATTTCTGAGATACGATAATCAAAAGATTCTGATCCCTAACAGTATCCTTGCTACTAAGGCCATAAATAACTTCTATCGTAGTCCTGATATGGGAGATGCTATTGAATTCTGTATACATGTGTCTACCCCGATTGAAAAGATTTCAGCCGTGAAACACAGAATACAAAGTTACATTGACAACAAGAAGGAGCATTGGTATGCTTCACCTCTCATAGTCTTCAAGGATTGTGAACAATTAAACATGATAAGATTGGCAGTATGGCCAACACATAAAATGAATTTCCAAGACATGGGAGAAAGATTCTTGAGGAGATCCCTTTTGATTGAAGAGATGATCAAGATTTTCCAGGACCTTGACTTGCAGTACCGTCTCTTGCCACTTGATATTAGCATTAGAAGCATGCCTACCACTTCTGACCGACTTCCACCTAGTTGGGCAACAATCACAGGTTGA 2790 0.4269 MQSSIRKSFKSYASYSNNLSRRFSLTGNADSSSSDPENLPILLHQDNNNPFPPSSMAAGGDFVVKINDADPSVVSPSIWRESSYDFWNDDSTTDERDNANQDSFDFRHKAQLSPEKDPPSRLIGKFLHKQRASGEISLDMDLEMDELQHDSADGNLTPVEESPTVNHYRISRDIKVSFEEPPPNLVELANDYAVRRRNSKDSPSIGEFQRPPKHDRRGGSPSPSGDGEVLRCTSNASFERNLSMQRRSSLLKAKTRSRLLDPPEEPDKKSGRVPGSGQMFSGFMGKKGGDDDDDDPFLEEDLPDEYKKTRFSFWILLEWLSLILIIALLITTLSIPLLRNKHLWQLKLWKWEVMILVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQKCVWLGLVLIAWHLLFDKRVQRETNSSFLEYVTKILVCFLVGTVVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLIELQKAEEEEEKLADEVQKLQNAGVTIPPGLRATAFSTIKSGRLRSGVLQRSPIISRPLSKKSDDGSGGITIDHLHKLNPKNVSAWNMKRLINMVRHGALTTLDEQILGSANEDENATQIRSENEAKAAAKKIFLNVARRSCRYICLDDLMRFMREDEAEKTLTLFEGASESGKISKPALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVILIIVIIWLLILGIATTKFLLFLSSQVVLVAFIFGNTCKTIFESIIFLFVLHPFDVGDRCEIDGVQMVVEEMNILTTVFLRYDNQKILIPNSILATKAINNFYRSPDMGDAIEFCIHVSTPIEKISAVKHRIQSYIDNKKEHWYASPLIVFKDCEQLNMIRLAVWPTHKMNFQDMGERFLRRSLLIEEMIKIFQDLDLQYRLLPLDISIRSMPTTSDRLPPSWATITG 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0278 929 MobiDBLite consensus disorder prediction 24 55 - -
Lal12g0278 929 MobiDBLite consensus disorder prediction 196 221 - -
Lal12g0278 929 Coils Coil 485 508 - -
Lal12g0278 929 PIRSF Memb_At2g17000 66 929 IPR016688 -
Lal12g0278 929 Gene3D - 754 803 IPR023408 -
Lal12g0278 929 Pfam Mechanosensitive ion channel 696 895 IPR006685 GO:0016020|GO:0055085
Lal12g0278 929 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 918 - -
Lal12g0278 929 MobiDBLite consensus disorder prediction 253 285 - -
Lal12g0278 929 MobiDBLite consensus disorder prediction 196 230 - -
Lal12g0278 929 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 918 IPR016688 -
Lal12g0278 929 SUPERFAMILY Sm-like ribonucleoproteins 744 803 IPR010920 -
Lal12g0278 929 MobiDBLite consensus disorder prediction 24 54 - -
Lal12g0278 929 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0278 Lal-Chr12 1978807 1982886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0278 78 926 Mechanosensitive Ion Channel Family AT1G78610 58.258 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0278 K22048 - gmx:102665658 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0278 12 1978807 1982886 Lal12g0278 12 1978807 1982886 ECH