Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0270 ATGTTATCAGAGTTGATGAAATTTTTGAGGGCCTGCTTCCGGCCGAGCTCGGACAGATACGCACACACAGGCTCGGATGCTGGAGGTAGACAGGATGGACTATTGTGGTACAAAGACTCGGGACAGCATTTTCACGGTGAATTTTCGATGGCTGTGATCCAAGCCAATAACTTGCTTGAGGATCAGAGTCAGGTTGAATCTGGTACTTTGAGTACCAATGAATTTGGCCCTTGTGGTACCTTCGTTGGGGTCTATGATGGGCATGGAGGGCCTGAGACATCGCGGTTTATCAATGATCACCTGTTTCAACATCTCAAGAGATTTACTTCAGAGCAACAATCAATGTCAGTGGATGTAATTCGCAAGGCATTTCAAGCAACAGAAGATGCATTTATGTCACTCGTTGCCAGACAATGGTCAATGAACGCACAAATTGCAGCTGTTGGATCATGTTGTCTTGTTGGTGTTATTTGTAATGGAACTCTTTATATAGCAAATGCTGGCGATTCCCGGGCTGTTTTGGGAAGAGTAGTCAAGGCAACTGGTGAGGTTTTAGCCACACAATTATCAACAGAGCACAATGCATCAATAGAATCTGTAAGACAGGAGCTGCATTCTTTGCACCCTGATGATCCAAATATTGTTGTTTTAAAGCATAACGTATGGCGTGTAAAGGGCATTATTCAAGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAATTCAACAGAGAACCTCTTTATGTTAGGTTTCGACTTCGTGAACCTTTCAAGAGGCCAATACTGAGCTCAGAACCATCAATAACAGTGCACCAGTTGCAACCACACGATCAATTTGTTATATTAGCATCTGATGGGCTATGGGAGCATCTTAGCAATCAAGAAGCAGTCGATATAGTTGCAAATAATACCCGAAGTGGAAGTGCAAGGAGGCTGGTGAAAGTAGCACTTCAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCAGACTTGAAGAAAATTGACCGTGGAGTTCGTCGCCATTTTCACGATGACATCACTGTGATTGTTGTATATCTCGATTCAAATCTCATGAATAGGGCAAGCACAGTCAAGTTCCCTAGAATTTCGGTTAGAGGGGGCGGTATTCACCTTCCTCCTAACACACTGGCACCTTGTACAACACCAACAGAGGTTGGTGGTAACTGA 1194 0.433 MLSELMKFLRACFRPSSDRYAHTGSDAGGRQDGLLWYKDSGQHFHGEFSMAVIQANNLLEDQSQVESGTLSTNEFGPCGTFVGVYDGHGGPETSRFINDHLFQHLKRFTSEQQSMSVDVIRKAFQATEDAFMSLVARQWSMNAQIAAVGSCCLVGVICNGTLYIANAGDSRAVLGRVVKATGEVLATQLSTEHNASIESVRQELHSLHPDDPNIVVLKHNVWRVKGIIQVSRSIGDVYLKKAEFNREPLYVRFRLREPFKRPILSSEPSITVHQLQPHDQFVILASDGLWEHLSNQEAVDIVANNTRSGSARRLVKVALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVYLDSNLMNRASTVKFPRISVRGGGIHLPPNTLAPCTTPTEVGGN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0270 397 ProSiteProfiles PPM-type phosphatase domain profile. 44 355 IPR001932 -
Lal12g0270 397 Gene3D - 37 365 IPR036457 -
Lal12g0270 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 387 - -
Lal12g0270 397 SUPERFAMILY PP2C-like 55 356 IPR036457 -
Lal12g0270 397 Pfam Protein phosphatase 2C 80 324 IPR001932 -
Lal12g0270 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 387 - -
Lal12g0270 397 SMART PP2C_4 39 353 IPR001932 -
Lal12g0270 397 CDD PP2Cc 48 355 IPR001932 -
Lal12g0270 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0270 Lal-Chr12 1934135 1939499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0270 1 396 PP2C-type Phosphatase Gene Family AT4G38520 73.990 0.0 634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0270 12 1934135 1939499 Lal12g0270 12 1934135 1939499 ECH
Lal12g0270 12 1934135 1939499 Lal13g0244 13 1538677 1543004 LSH
Lal12g0270 12 1934135 1939499 Lal13g1133 13 8648999 8652888 LSH
Lal12g0270 12 1934135 1939499 Lal24g0208 24 1512277 1516702 LSH
Lal1g1837 1 20658654 20661592 Lal12g0270 12 1934135 1939499 PCT
Lal12g0270 12 1934135 1939499 Lal1g1837 1 20658654 20661592 PCT