Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal12g0268 | ATGGATTTTGACGAATATGAATATTTAGAGAAAACTGTTGAAAATCTTGATGATAATGAAACTCCTAATGGCATCGTAACTGTGAAATCTGAAGATAGGGACCGTAGTCGTCGTTCTAAGCATTCAAAATCTGGAGATGCTGCTTCTCGCGATGATAATAATGATGATAGAGTGAAACATAGAGACTCTTCGCGTCATCGGTCACGGTCTAGAGATGGAGAAAAGGCGAAAGACAGACAAAGAAGCTCTGGAGGTGAGAGGGATAAGAGAAGAGATGATAAGGACAGAGAGAGACATGGAAGGGAGAGAGATAGAAGAGATCGAGGTAGCGAGAGTGAAAGGGAAAGGGAGAAAGAACACTCACAGAGAACCAGAACCAAATCTGAAAGGCATCCAACTGAATTGGATGAGCGAGACCAAGAGATGAGTCGTGGTGGTGGCAGGGACTATAAAGATAGGGAAAGAATTCGGGATAGGGATTACAGAGGAGAAAGAGAAAGTGTGAGGGAACCTTGGGAACAAAACAGACGACATAAAGAGAAAAAGGAAGATGCGGCAGAACCTGAGGCAGATCCTGAACGTGATCAAAGAACTGTGTTTGCTTATCAGGTTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAATTATTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGTTTGATTATGGACCGCAATTCGAGACGCTCTAAGGGTTTTGGGTATATTGAGTTCTATGATGCAATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAACCACTTCTTGGTCAACCAGTGATGGTAAAGCCATCTGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCTGGTGGAACCAATGGAGGTATTGGCCCTTATTCTGGGGGTGCAAGAAGGTTGTATGTTGGCAACCTGCATTTTAGTATGACCGAAGCTGATCTCCGTTCGGTGTTCGAAGCATTTGGTCAGGTTGAGCTAGTTCAGCTACCTCCTGATGAGAGTGGGCACTGCAAAGGTTTTGGCTTCGTGCAGTTTGCACGCCTTGAAGATGCACGAAATGCCCAGAAGTTGAATGGTTTGGAGATTGGCGGCAGGACAATCAAGGTATCAGCTATTACTACGGATCAAGCTGGAATGCTAGAAGTAGGAGGAAATACTGGTGAGTTTGATGATGAAGAAGGCGGTGGCTTGTATCTGAATGCATCTTCTCGAGCCTTACTCATGCAGAAGTTGGATCGCAGTGGCACCACATCCAGTGTGGTTGGATCTATTGGTAATTCTGCTGTCAACAACACAGGTGTTAATCTACCAGCGTCGGGAAACATACCAGCAACAACAATTCTGGGAGCTGTGCCAGCAGGTTCTTCTATTGCTGCAGTACCTGGATTGCCAGGTGGAGGTCTCCAATTTCCCATTGCTGCCGCCACAATTCCTTCTATTGATACTATCGGTGTTCCATGTGAATGCTTATGGTTAAAGAATATGTTCGATCCCAATGACGAGAAGGAACCTGATTTTGATTTTGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGCAAGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTTTTTACGATTTGAGAATACTCAATCTGCTATGAGTGCACAAGGTGCCTTGCATGGACGATGGTTTGCTGGGAAGATGATCACTGCTAGTTTCATGATTCCCCAGTCATATGAAGATAAATTCCCAGATAGCAGATGA | 1758 | 0.4414 | MDFDEYEYLEKTVENLDDNETPNGIVTVKSEDRDRSRRSKHSKSGDAASRDDNNDDRVKHRDSSRHRSRSRDGEKAKDRQRSSGGERDKRRDDKDRERHGRERDRRDRGSESEREREKEHSQRTRTKSERHPTELDERDQEMSRGGGRDYKDRERIRDRDYRGERESVREPWEQNRRHKEKKEDAAEPEADPERDQRTVFAYQVSLKADERDVYELFSRAGKVRDVRLIMDRNSRRSKGFGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVAGGTNGGIGPYSGGARRLYVGNLHFSMTEADLRSVFEAFGQVELVQLPPDESGHCKGFGFVQFARLEDARNAQKLNGLEIGGRTIKVSAITTDQAGMLEVGGNTGEFDDEEGGGLYLNASSRALLMQKLDRSGTTSSVVGSIGNSAVNNTGVNLPASGNIPATTILGAVPAGSSIAAVPGLPGGGLQFPIAAATIPSIDTIGVPCECLWLKNMFDPNDEKEPDFDFDIKEDVEAECSKFGKLKHIYVDKKSAGFVFLRFENTQSAMSAQGALHGRWFAGKMITASFMIPQSYEDKFPDSR | 585 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal12g0268 | 585 | CDD | RRM3_RBM39_like | 492 | 572 | - | - | |
Lal12g0268 | 585 | MobiDBLite | consensus disorder prediction | 27 | 195 | - | - | |
Lal12g0268 | 585 | CDD | RRM1_RBM39_like | 198 | 270 | - | - | |
Lal12g0268 | 585 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 197 | 274 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 584 | - | - | |
Lal12g0268 | 585 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 301 | 377 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 303 | 371 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 515 | 567 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 207 | 266 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | SMART | rrm2_1 | 302 | 373 | IPR003954 | GO:0003676 | |
Lal12g0268 | 585 | SMART | rrm2_1 | 492 | 570 | IPR003954 | GO:0003676 | |
Lal12g0268 | 585 | SMART | rrm1_1 | 198 | 270 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | SMART | rrm1_1 | 302 | 373 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | SMART | rrm1_1 | 492 | 570 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 392 | 509 | IPR029123 | - | |
Lal12g0268 | 585 | SUPERFAMILY | RNA-binding domain, RBD | 301 | 578 | IPR035979 | GO:0003676 | |
Lal12g0268 | 585 | MobiDBLite | consensus disorder prediction | 12 | 195 | - | - | |
Lal12g0268 | 585 | Gene3D | - | 487 | 585 | IPR012677 | - | |
Lal12g0268 | 585 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 491 | 574 | IPR000504 | GO:0003723 | |
Lal12g0268 | 585 | Gene3D | - | 131 | 282 | IPR012677 | - | |
Lal12g0268 | 585 | Gene3D | - | 290 | 380 | IPR012677 | - | |
Lal12g0268 | 585 | SUPERFAMILY | RNA-binding domain, RBD | 190 | 299 | IPR035979 | GO:0003676 | |
Lal12g0268 | 585 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 75 | 583 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal12g0268 | Lal-Chr12 | 1911775 | 1919064 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal12g0268 | 198 | 372 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.249 | 3.56e-15 | 77.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal12g0268 | K13091 | - | gmx:100789839 | 721.465 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal12g0268 | 12 | 1911775 | 1919064 | Lal12g0268 | 12 | 1911775 | 1919064 | ECH |