Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0268 ATGGATTTTGACGAATATGAATATTTAGAGAAAACTGTTGAAAATCTTGATGATAATGAAACTCCTAATGGCATCGTAACTGTGAAATCTGAAGATAGGGACCGTAGTCGTCGTTCTAAGCATTCAAAATCTGGAGATGCTGCTTCTCGCGATGATAATAATGATGATAGAGTGAAACATAGAGACTCTTCGCGTCATCGGTCACGGTCTAGAGATGGAGAAAAGGCGAAAGACAGACAAAGAAGCTCTGGAGGTGAGAGGGATAAGAGAAGAGATGATAAGGACAGAGAGAGACATGGAAGGGAGAGAGATAGAAGAGATCGAGGTAGCGAGAGTGAAAGGGAAAGGGAGAAAGAACACTCACAGAGAACCAGAACCAAATCTGAAAGGCATCCAACTGAATTGGATGAGCGAGACCAAGAGATGAGTCGTGGTGGTGGCAGGGACTATAAAGATAGGGAAAGAATTCGGGATAGGGATTACAGAGGAGAAAGAGAAAGTGTGAGGGAACCTTGGGAACAAAACAGACGACATAAAGAGAAAAAGGAAGATGCGGCAGAACCTGAGGCAGATCCTGAACGTGATCAAAGAACTGTGTTTGCTTATCAGGTTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAATTATTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGTTTGATTATGGACCGCAATTCGAGACGCTCTAAGGGTTTTGGGTATATTGAGTTCTATGATGCAATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAACCACTTCTTGGTCAACCAGTGATGGTAAAGCCATCTGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCTGGTGGAACCAATGGAGGTATTGGCCCTTATTCTGGGGGTGCAAGAAGGTTGTATGTTGGCAACCTGCATTTTAGTATGACCGAAGCTGATCTCCGTTCGGTGTTCGAAGCATTTGGTCAGGTTGAGCTAGTTCAGCTACCTCCTGATGAGAGTGGGCACTGCAAAGGTTTTGGCTTCGTGCAGTTTGCACGCCTTGAAGATGCACGAAATGCCCAGAAGTTGAATGGTTTGGAGATTGGCGGCAGGACAATCAAGGTATCAGCTATTACTACGGATCAAGCTGGAATGCTAGAAGTAGGAGGAAATACTGGTGAGTTTGATGATGAAGAAGGCGGTGGCTTGTATCTGAATGCATCTTCTCGAGCCTTACTCATGCAGAAGTTGGATCGCAGTGGCACCACATCCAGTGTGGTTGGATCTATTGGTAATTCTGCTGTCAACAACACAGGTGTTAATCTACCAGCGTCGGGAAACATACCAGCAACAACAATTCTGGGAGCTGTGCCAGCAGGTTCTTCTATTGCTGCAGTACCTGGATTGCCAGGTGGAGGTCTCCAATTTCCCATTGCTGCCGCCACAATTCCTTCTATTGATACTATCGGTGTTCCATGTGAATGCTTATGGTTAAAGAATATGTTCGATCCCAATGACGAGAAGGAACCTGATTTTGATTTTGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGCAAGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTTTTTACGATTTGAGAATACTCAATCTGCTATGAGTGCACAAGGTGCCTTGCATGGACGATGGTTTGCTGGGAAGATGATCACTGCTAGTTTCATGATTCCCCAGTCATATGAAGATAAATTCCCAGATAGCAGATGA 1758 0.4414 MDFDEYEYLEKTVENLDDNETPNGIVTVKSEDRDRSRRSKHSKSGDAASRDDNNDDRVKHRDSSRHRSRSRDGEKAKDRQRSSGGERDKRRDDKDRERHGRERDRRDRGSESEREREKEHSQRTRTKSERHPTELDERDQEMSRGGGRDYKDRERIRDRDYRGERESVREPWEQNRRHKEKKEDAAEPEADPERDQRTVFAYQVSLKADERDVYELFSRAGKVRDVRLIMDRNSRRSKGFGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVAGGTNGGIGPYSGGARRLYVGNLHFSMTEADLRSVFEAFGQVELVQLPPDESGHCKGFGFVQFARLEDARNAQKLNGLEIGGRTIKVSAITTDQAGMLEVGGNTGEFDDEEGGGLYLNASSRALLMQKLDRSGTTSSVVGSIGNSAVNNTGVNLPASGNIPATTILGAVPAGSSIAAVPGLPGGGLQFPIAAATIPSIDTIGVPCECLWLKNMFDPNDEKEPDFDFDIKEDVEAECSKFGKLKHIYVDKKSAGFVFLRFENTQSAMSAQGALHGRWFAGKMITASFMIPQSYEDKFPDSR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0268 585 CDD RRM3_RBM39_like 492 572 - -
Lal12g0268 585 MobiDBLite consensus disorder prediction 27 195 - -
Lal12g0268 585 CDD RRM1_RBM39_like 198 270 - -
Lal12g0268 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Lal12g0268 585 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 584 - -
Lal12g0268 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 377 IPR000504 GO:0003723
Lal12g0268 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 371 IPR000504 GO:0003723
Lal12g0268 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 567 IPR000504 GO:0003723
Lal12g0268 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 266 IPR000504 GO:0003723
Lal12g0268 585 SMART rrm2_1 302 373 IPR003954 GO:0003676
Lal12g0268 585 SMART rrm2_1 492 570 IPR003954 GO:0003676
Lal12g0268 585 SMART rrm1_1 198 270 IPR000504 GO:0003723
Lal12g0268 585 SMART rrm1_1 302 373 IPR000504 GO:0003723
Lal12g0268 585 SMART rrm1_1 492 570 IPR000504 GO:0003723
Lal12g0268 585 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 392 509 IPR029123 -
Lal12g0268 585 SUPERFAMILY RNA-binding domain, RBD 301 578 IPR035979 GO:0003676
Lal12g0268 585 MobiDBLite consensus disorder prediction 12 195 - -
Lal12g0268 585 Gene3D - 487 585 IPR012677 -
Lal12g0268 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 491 574 IPR000504 GO:0003723
Lal12g0268 585 Gene3D - 131 282 IPR012677 -
Lal12g0268 585 Gene3D - 290 380 IPR012677 -
Lal12g0268 585 SUPERFAMILY RNA-binding domain, RBD 190 299 IPR035979 GO:0003676
Lal12g0268 585 TIGRFAM SF-CC1: splicing factor, CC1-like family 75 583 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0268 Lal-Chr12 1911775 1919064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0268 198 372 Eukaryotic Initiation Factors Gene Family AT4G34110 28.249 3.56e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0268 K13091 - gmx:100789839 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0268 12 1911775 1919064 Lal12g0268 12 1911775 1919064 ECH