Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0262 ATGGATGCTCATCATAGCAGAGGGGATCATATTCTTCCTATCCGCTTCTTCAAGTTTATTCTTAAAACCAATCTACAAAAAATTAAAATACCTAACAAGTTCACAAAGATATATGGAGGTGGTATGTCAAATCCAGTGTTTTTGAAGCCTCCAGATGGCACTGAATGGAAAGTGCATTGGATCAAAAAGAATGATGAGTTTTGGTTGGAAAAGGGTTGGAAAGAGTTTACTGAAAACTACTCTCTATATCATGGGGTTTTGGTGATGTTTAAATATGAAGGAACTTCCCACTTTGATGTAAACATACTTGACAATAGTAGCCTTGAAATAGAATACCCTTCCTATCATACTTGTAAAGAAGAACAGAACCTTGATGATAGTGTTCATGAATCCGTTAGAATTTTGAATGACTGGGAAAACCACAAGGCTAGTGAAAGGTCACCAATACCTTTGGCTTCTGCTCAATCAAGTAAGAAAAGGAAAGGTGAGGAGGCTACTCCTACAAGTTTATCAATGAATTGGCCAAGAGAACCTAGAGCACAAGTATTAGCTAAGAAATTCGTGTCGGAATCAGATAATCCTTTCTTCACTAAAACTATGAAGCCTATTGATGTGGTTGAAAGCCGTCTGAGTGTACCAAATATGGATGGTTATATTGAGAAAAAGAACATGAATGTAACATTAGAACATGGAGAAAGATCGTGGAAAGTGAAGTTGCTGGGTTCTAACAATTCTGCATGTCGCCGACGCTTCTCTGCTGGTTGGTGCTTGTTTGCAAGTGAAAGTGAGTTGCATCCTGGAGATGTTTGCATCTTTGAACTCATTAACACAGAAGATATAGTGTTTAAGGTTCATGTTTTCAAAGGCTAA 870 0.377 MDAHHSRGDHILPIRFFKFILKTNLQKIKIPNKFTKIYGGGMSNPVFLKPPDGTEWKVHWIKKNDEFWLEKGWKEFTENYSLYHGVLVMFKYEGTSHFDVNILDNSSLEIEYPSYHTCKEEQNLDDSVHESVRILNDWENHKASERSPIPLASAQSSKKRKGEEATPTSLSMNWPREPRAQVLAKKFVSESDNPFFTKTMKPIDVVESRLSVPNMDGYIEKKNMNVTLEHGERSWKVKLLGSNNSACRRRFSAGWCLFASESELHPGDVCIFELINTEDIVFKVHVFKG 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0262 289 Gene3D - 176 289 IPR015300 -
Lal12g0262 289 Gene3D - 13 107 IPR015300 -
Lal12g0262 289 CDD B3_DNA 194 288 IPR003340 GO:0003677
Lal12g0262 289 MobiDBLite consensus disorder prediction 145 174 - -
Lal12g0262 289 SUPERFAMILY DNA-binding pseudobarrel domain 189 288 IPR015300 -
Lal12g0262 289 CDD B3_DNA 15 104 IPR003340 GO:0003677
Lal12g0262 289 Pfam B3 DNA binding domain 196 288 IPR003340 GO:0003677
Lal12g0262 289 Pfam B3 DNA binding domain 24 103 IPR003340 GO:0003677
Lal12g0262 289 PANTHER B3 DOMAIN-CONTAINING 13 288 - -
Lal12g0262 289 SMART B3_2 196 288 IPR003340 GO:0003677
Lal12g0262 289 SMART B3_2 16 106 IPR003340 GO:0003677
Lal12g0262 289 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lal12g0262 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 288 - -
Lal12g0262 289 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
Lal12g0262 289 ProSiteProfiles B3 DNA-binding domain profile. 195 289 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0262 Lal-Chr12 1885665 1887298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0262 12 288 B3 DNA Binding Superfamily AT3G18990 28.448 2.29e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal12g0262 B3 6.3e-12 CL0405