Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0261 ATGGGTAGTTGTGGAAGAGAAGGAGCAGTGAGGCAGTATATAAGGTCCAAGGTACCTCGTTTAAGGTGGACTCATGAGCTTCATCGTTGCTTTGTTCATGCCATTGAAAGACTTGGTGGTCATCATAAGGCTACTCCTAAGCTTGTTCTTCAGTTAATGGATGTCAAAGGGCTCACCATCTCACATGTCAAGAGCCATCTTCAGATGTATAGAGGCATGAGAGGTGACTTGGGAAGACAAGGTACTACAACATTCTTTTTCTTAGGTAAGACATTCACCCAACATAGAAACCAATCTTTTGATGAGGACTATGATGGTTGTGTTGATGAAGTTAATGATGTTGGGGTTGGCTACCCTGTTTGTTCAAAACCCATTGCAAAAGATTCTGATTCTCTCTTCAGCAGCTACAGTAATCTCTCCCCAAAAAGAGCTAGAATCGAGACAAGGAGTTGTTGCGTCTCAAAGAGCCCGCAATGCAGCCAAAGAATATGTGATGCAGTGCCAAATACGTACCAATGCTTTTATGATATTGGAGAGAAGATAACTGAGCCCAAGGGAATAAAGGAGAGTAGTTACTGTGTTGTGGGTGGTTCAACATGGCTGACACAACAACAACAACCTCATTCACACACTCTACTACCAGATTTTGGTAACCCTAGTTCATTGGAATGTCCAAACCAAGAATCTGATTTCCTCCAGGTTACTAAATTAAATGAAAGCAAGACCAGTTCACAGCCAATGAAAATATTTATGAACACAGAGAGGGAACATGGAAAAGAAGATGAAGATGTAGGAAAGTGTGAGTTGTCATTGTCACTCTCATTGCCAAAACCTTCACCTCAAGGGAGTAATGCTTCTTCAGCAAGTGAGATTAGTGAGGCTATTTCATCATGGTCTGGGTTCACCAATTACAAGGACTGCTATAGTTTTTCCACTGTCAAAGATAGAATTAATTTAGACCTCTCTTTAGCCCTATGTGGCAATTGA 987 0.4134 MGSCGREGAVRQYIRSKVPRLRWTHELHRCFVHAIERLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRGMRGDLGRQGTTTFFFLGKTFTQHRNQSFDEDYDGCVDEVNDVGVGYPVCSKPIAKDSDSLFSSYSNLSPKRARIETRSCCVSKSPQCSQRICDAVPNTYQCFYDIGEKITEPKGIKESSYCVVGGSTWLTQQQQPHSHTLLPDFGNPSSLECPNQESDFLQVTKLNESKTSSQPMKIFMNTEREHGKEDEDVGKCELSLSLSLPKPSPQGSNASSASEISEAISSWSGFTNYKDCYSFSTVKDRINLDLSLALCGN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0261 328 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Lal12g0261 328 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 71 IPR006447 GO:0003677
Lal12g0261 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Lal12g0261 328 Gene3D - 18 74 - -
Lal12g0261 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 328 IPR044848 GO:0003700
Lal12g0261 328 SUPERFAMILY Homeodomain-like 17 71 IPR009057 -
Lal12g0261 328 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0261 Lal-Chr12 1872836 1876852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0261 1 74 G2-like Transcription Factor Family AT1G14600 73.418 1.48e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal12g0261 Myb_DNA-binding 7.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0261 - - gmx:100787188 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0261 12 1872836 1876852 Lal13g0231 13 1472897 1476604 LSH