Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0258 ATGGCAGCATCATCTTCCTCAGCATCACTCTTTGGGTTTAGAGAAGAGGACCAGAATCAGATGAATCAACAACATTCATCTTCAGTAACTCCAGCTGCACCACCACAGAAGAAGAAGAGAAACCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCATTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGCTTCCAAAGAGAGCAAAACTTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGAGTACAAAAGAGCCAAGGAGAAAGGTTTATCTGTGCCCTGAGCCCACTTGTGTCCATCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAAAAGTATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGTACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGAAGGGACAGTTTCATCACCCACAGGGCCTTTTGTGATGCACTAGCTCAAGAGAGTGTAAGACAGCCACCAAATCTGAGCAGTGGCATTGGCAGCACCAGCCACCTCTATGGTAGTAATAATAGTAACATGGCATTGGCCTTATCTCAAGTGACTACTCCTCAAATGTCCAACATGCAAGACCATATCAATAACGAACAAAGATCTGCTGTCCCACTTGATATATTGGGCCTTGGTAGTAATGTCGGTCGGACCGGTCAATTTGACCATATCCTCCATCCATCTTTGCAGGCTGGTTCATCATCATTTAAGCCTTCACAGAAAACTATGCAGAACTCAGGAGTTTCATTCTTTATGGCTGCTGATAATTCAAACCAAAACTACCACCACCATGATCAGTCTCAACAACAAGGGATGGTGCAACAGAACAAAGATCCATTCCAAGGACTCATGCATTTATCTCATGATGGTGTTAACCATCATCATAACAGTTCCTCTTCACCTGGTGGATCAGCGAACTTCTTCAACCATGCATTCCTTTCAAGTAATACCAGCACTAATAGCAGCAACAACTCTTTCTCAGAACAATTCAACAATGCCAATGGAAACGTTGGAGGAGGCAATGAAGGAATCAACTTATTCAGTGCAGGTAATCCTATTGTGGGTGGTGGTGGTCATCATCAGCAAACAATGACTTCAAGTGCACCTTCTCTATTCAGCACATCTCTCCAAAGTAACAATAGTGCTGCCAATACTCATCACATGTCTGCAACTGCACTGCTTCAGAAAGTTGCTCAAATGAGTGCAATTTCCAGCAACAGCACCAACTCACTTCTAAAAAGCTTTGGCAGCAGCATTTCCTCTAGCAGCGGATCCAAAGCTGAACAGCATAGACCAATGCATGTTCCTGCTCCTCCTCCTCCTCCTCCTTCTGCTGCAAACTATAACAACATCTTCGGTGCAAATGAAAACAGCAACAATAACCTGCAAGACCTGATGAACTCGTTTGCAGCCAGTGGAAACACTTCAATATTTGAACATGGGGGTTCAGTAGGGCTCACTGGGTTTGAACCATATGATCATAACGCAAACAGAAGGGAACAACCAAAACTGCATGGAGTGAACATTGGATCATCAGGCTCAGATGATAGGCTCACTCGTGACTTTCTTGGTGTTGGTCAAATAGTGAGAAACATGAGTGGTGGAAGTGGAGGACTTGTTTCACAAAGGGAGCAACATGGCTTCAAATTGAACACTACTTTGGAGACAGAAAGGAATAATAATGCAGTGCCGGCAAGGCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1869 0.4441 MAASSSSASLFGFREEDQNQMNQQHSSSVTPAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVRQPPNLSSGIGSTSHLYGSNNSNMALALSQVTTPQMSNMQDHINNEQRSAVPLDILGLGSNVGRTGQFDHILHPSLQAGSSSFKPSQKTMQNSGVSFFMAADNSNQNYHHHDQSQQQGMVQQNKDPFQGLMHLSHDGVNHHHNSSSSPGGSANFFNHAFLSSNTSTNSSNNSFSEQFNNANGNVGGGNEGINLFSAGNPIVGGGGHHQQTMTSSAPSLFSTSLQSNNSAANTHHMSATALLQKVAQMSAISSNSTNSLLKSFGSSISSSSGSKAEQHRPMHVPAPPPPPPSAANYNNIFGANENSNNNLQDLMNSFAASGNTSIFEHGGSVGLTGFEPYDHNANRREQPKLHGVNIGSSGSDDRLTRDFLGVGQIVRNMSGGSGGLVSQREQHGFKLNTTLETERNNNAVPARQAFGGGGGNFQ 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0258 622 Gene3D Classic Zinc Finger 45 113 - -
Lal12g0258 622 MobiDBLite consensus disorder prediction 1 51 - -
Lal12g0258 622 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Lal12g0258 622 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lal12g0258 622 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Lal12g0258 622 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 581 - -
Lal12g0258 622 SMART c2h2final6 107 137 IPR013087 -
Lal12g0258 622 SMART c2h2final6 142 162 IPR013087 -
Lal12g0258 622 SMART c2h2final6 66 88 IPR013087 -
Lal12g0258 622 MobiDBLite consensus disorder prediction 1 43 - -
Lal12g0258 622 Gene3D Classic Zinc Finger 120 199 - -
Lal12g0258 622 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Lal12g0258 622 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 581 - -
Lal12g0258 622 MobiDBLite consensus disorder prediction 460 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0258 Lal-Chr12 1833512 1840772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0258 36 582 IDZ Gene Family AT2G02070 47.500 1.68e-138 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0258 zf-C2H2_jaz 3.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0258 K25870 - gmx:100786121 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0258 12 1833512 1840772 Lal13g0226 13 1431987 1438100 LSH
Lal12g0258 12 1833512 1840772 Lal24g0195 24 1402306 1406816 LSH