Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0254 ATGATCATAACGTTACACCTTAAATTACTGCTTCTGTTTATATTTCTTTTGTTTCTCACAAATACTAGCCAATTGGTATTTGCAAAAGAGCAATATAATGTTAGTGAAGCATGCAGAATAACAAGGTATCCAGATCTTTGTATCAGCTCGCTTGCACCATTCTCTCTAAGTGAAGGAAGAAGCCTCAGCAAGTGGGCAAGGTTAGGAGTATCAGTAACAATAAGCGAGGTTAAGAGTGTTCAAACATATCTAACAAGGTTGAAGAGACAAGGGCATTTCAAAAGAAGAAACAAAGTTGCACTTTCAGATTGTATTGAGACTTTTCAATATGCACTTGATGAGCTTCACAGATCACTTAGTGTGTTAAGAAGATTGAGCAAAAGCACTTTTAGCACCCAAATGGAGGACCTAAATACATGGTTAAGTGCAGCACTAAGTGATGAAGATACTTGCCTTGATGGGTTTGAAAGCAATAAGGAAAGGAAAATCAAGTTGATGAGAAATCAGGTTCTGAAAGCATATTATATAACCAGTAACGCTTTGGCTTTTGTCAACAAGCTTGCCACTACAGGTTTGGGAAGTATATCTGATTTGGATCCATAG 603 0.3715 MIITLHLKLLLLFIFLLFLTNTSQLVFAKEQYNVSEACRITRYPDLCISSLAPFSLSEGRSLSKWARLGVSVTISEVKSVQTYLTRLKRQGHFKRRNKVALSDCIETFQYALDELHRSLSVLRRLSKSTFSTQMEDLNTWLSAALSDEDTCLDGFESNKERKIKLMRNQVLKAYYITSNALAFVNKLATTGLGSISDLDP 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0254 200 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 187 IPR035513 -
Lal12g0254 200 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 14 182 - -
Lal12g0254 200 PANTHER PECTINESTERASE INHIBITOR-LIKE 14 182 - -
Lal12g0254 200 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 189 IPR035513 -
Lal12g0254 200 CDD PMEI-like_3 37 189 - -
Lal12g0254 200 Pfam Plant invertase/pectin methylesterase inhibitor 34 182 IPR006501 GO:0004857
Lal12g0254 200 SMART PMEI_2 29 183 IPR006501 GO:0004857
Lal12g0254 200 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0254 Lal-Chr12 1806790 1807392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0254 37 190 Carbohydrate Esterase AT3G14310 34.375 2.00e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0254 - - gmx:100791264 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0254 12 1806790 1807392 Lal12g0254 12 1806790 1807392 ECH