Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0249 ATGAAGTTCTGCAAGACGTACCAGGAGTACATGCAAAACCAACAGCAACAGAACCTTCCTAGGCTTGGTTTCAAAAAACTTAAGAAGATCATGAAGACTTGTAGGCAAGATTGTCATTCCCAGAATACCATTCATGCTATCAAATGCCCAGTGTGCGATGGGATGTTTTTCCCTTCTCTTTTCAACGAAATGTCAGATGTCTTAGGTTGCTTTAATCAGCGTGCACAAAAGTTACTGGAGCTACATCTTGCTTCTGGATTCAGAAAGTACCTTTTCTGGTTGAAAGGAAAATTACACGGGGAACACACTGCTCTAGTTCAAGATGGCAGAGATTTAGTCGCTTATGCGCTAATAAATGCCATTGCAATTCGAAAAATACTCAAGAAATATGATAAGATTCATTACTCCAAGCAAGGGCAATTATTCAAGTCACAAGTACAGACTATGCACAAGGAGATTCTTCAAAGTCCATGGCTTATTGAGCTTATGGCCTTATACCTGAACTTAAGGGAAAGTAATTTAAATTCAATGAAGGCACCTGCTTTGTTTGATGGATGTTCCCTCACATTTCATGATGGAAAGCCATCACTTACTTGTGAGCTATTTGGTTCCATCAAAATTGATATAGACTTCACTTGCTCTATATGCTTGGACACAGTGTTTGATCCATTTTCTCTGACTTGTGGGCATATATTCTGCTACAGCTGTGCTTGCTCTGCTGCATCCGCAAGTATTGTTGATGGACTTAAGGCAGCAGATCCTAAAGAGAAATGTCCTCTATGCCGAGAGGAAGGAGTTTATGAAGATGCCGTGCGCTTGGAAGAGCTAAATATTCTGTTAGCCCAAAGCTGCCATGAGTACTGGAAACAACGTCTTCAGACAGAGAGGGCCGAGAGGGTCAAGCAAGCTAAGGAACATTGGGAGTTGCAATGCAGGTCATTCATGGGAGTCTAA 954 0.4151 MKFCKTYQEYMQNQQQQNLPRLGFKKLKKIMKTCRQDCHSQNTIHAIKCPVCDGMFFPSLFNEMSDVLGCFNQRAQKLLELHLASGFRKYLFWLKGKLHGEHTALVQDGRDLVAYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQTMHKEILQSPWLIELMALYLNLRESNLNSMKAPALFDGCSLTFHDGKPSLTCELFGSIKIDIDFTCSICLDTVFDPFSLTCGHIFCYSCACSAASASIVDGLKAADPKEKCPLCREEGVYEDAVRLEELNILLAQSCHEYWKQRLQTERAERVKQAKEHWELQCRSFMGV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0249 317 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Lal12g0249 317 ProSiteProfiles Zinc finger RING-type profile. 213 262 IPR001841 -
Lal12g0249 317 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
Lal12g0249 317 Pfam Zinc finger, C3HC4 type (RING finger) 211 264 - -
Lal12g0249 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 315 IPR013083 -
Lal12g0249 317 SUPERFAMILY RING/U-box 206 265 - -
Lal12g0249 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 IPR033326 -
Lal12g0249 317 CDD SPX_BAH1-like 2 140 - -
Lal12g0249 317 SMART ring_2 213 261 IPR001841 -
Lal12g0249 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0249 Lal-Chr12 1776914 1782848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0249 210 264 C3H Transcription Factor Family AT4G28270 40.000 2.27e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0249 K16275 - gmx:100797432 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0249 12 1776914 1782848 Lal12g0249 12 1776914 1782848 ECH