Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal12g0248 | ATGCGGTCTGAAACTTCAACTTGGGTCACTTCCCTTTCATGTTCAACCTCAGGAGATGTTTCATTTGTTTCAAATCTACCTCATTGGCTTAGATTCATTTTCCTCTCTCCATGTCCTCAGAGAGCACTTTTCTCTGCTGTTGATGTCTTACTCTTGTTGACTTTCTTTGTGTTTGCCCTCACAAAACTCTATTCTAGGTTCACCTCTAATGAGAACAACCACTCAGAACTAAACAAGCCTCTTATAAGAAACAGAGAAGCTTCTGTCACAACAACAATATGGTTCAAGCTAACAATAACTGTAACATCTGTTTTGGCCATTTTGTACACTGTTGCTTGTATTTTGGTTTTTACCAGTTCCACACAGGAGACATGGAAGGTAGTTGATGGAGTGTTTTGGTTAGTTCAGGCCATAACACAAGTTATACTTGTAATATTGATTATTCATGAGAAAAGATTTGAAGCTGTTGCACATCCTTTATCCCTTAGGATTTATTGGATTGCAAATTTTATCATTGTTGCTTTGTTCTCAGCTTCTGGTGTTATTCGTTTTGTCTCTGTGGATGTAGAGGAAACCAAACACTTCAGCTTCTTGGTGGATGACATAGCTTCATTCATTTCTCTCCCTCTGTCACTTTTTCTGCTATTTGTTGCAGTTAAAGGATCCACTGGGATTAAGTCCAGCAACGACGAAATGCAACCGCTTAATGGTGATGATACCAAGCCAAATGATGATGTTACTGGGAGAAAATCCAGTGTTACTGGCTTTGCCTCAGCTTCTATAATATCCAAGGCCTTTTGGATTTGGATAAACCCCTTATTGAGCAAAGGGTATAAGGCACCACTGAAGATTGATGATGTTCCATACCTTTCTCCACAGCATAGAGCTGAGAGGATGTCAGTGATCTTTGAATCAAAATGGCCTAAATCAGATGAGAGTTCAAAGCATCCGGTTCGAACCACATTGCTTCGGGTCTTCTGGAGGGAAATAGCCTTCACTGCATTCCTTGCTGTTATCAGGTTAAGTGTCATGTTTGTAGGGCCTATTCTCTTACAGAGTTTTGTTGATTTCACAGCAGGGAAGGGAAGCTCTCCATATGAAGGATACTACCTTGTGTTGGTTCTCCTCTGTGCTAAATTTGTGGAAGTTTTGGCAACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATAAGATGCACTCTCATCACTTCCTTGTACAAGAAGGGGCTGAGGCTAACATGTTCAGCTCGGCAGGACCATGGTGTTGGGCCTATTGTGAATTACATGGCTGTTGATGCACAACAACTCTCTGATATGATGCTGCAGCTACATGCTGTGTGGATGATGCCATTTCAACTTGGTATTGGCTTATTATTGCTTTATAATTGTTTAGGTGCAGCAACAATTACAGCTTTGATTGGACTTCTTGGTATTATTGGGTTCATTTTGTTAAGTACTGGACAAAACAAAAAGTACCAATTTAATGCAATGATAAAGCGTGACTCAAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTGATCAAGTTCCAGGCATGGGAAGAGCATTTCAACCAGAGAATTCAGGGGTTCCGTGAGTCGGAGTTTGGGTGGTTTTCCAAGTTTATGTACTCAGTTTCTGGCAACATTGTTGTGTTGTGGAGTGCACCGTTATTGATATCAACTCTCACATTTGGCACCGCGCTTTTGCTTGGAGTTCCACTTGATGCTGGGACAGTTTTCACCACCACAACCGTGTTTAAGATCCTGCAAGAACCTATTAGGACCTTCCCACAGTCTATGATATCTCTTGCACAAGCAATGGTGTCACTGGGAAGGTTAGATAAGTACATGTCTAGCAGGGAATTATCAGAAGATTCGGTTGAGAGAGTGAGGGATTGTGATGGACAAACTGCTGTGGAGGTTAAAGATGGTACCTTTAGCTGGGATGATGATTCTAAACAGCAGGACTTGAAACATATTAATTTGGATATCAATAAGGGTGAGCTTACTGCTATAGTTGGGACTGTAGGGTCAGGAAAGTCTTCTATCCTTGCTTCAATTCTTGGTGAGATGCACAAAATTTCTGGAAAGGTTCATGTTTGTGGGAGTACTTCTTATGTTGCACAAACAGCATGGATTCAAAATGGGACAATTGAAGAAAACATTCTCTTTGGATTGCCCATGATCAGACACAAGTACAATGAAGTTGTCAGGGTTTGTTGCTTAGAGAAAGACCTGGAAATGATGGAGTATGGAGATCAGACAGAGATTGGAGAACGTGGCATCAATCTAAGCGGGGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATATCAAGACTGTGATATATATCTTCTCGACGATGTTTTCAGTGCTGTTGATGCGCATACCGGCTCTGAAATATTTAAGGAATGCGTGAGAGGAGCTCTAAAAGGCAAGACTGTTATTCTTGTCACACACCAAGTAGACTTCCTACATAATGTGGATCTTATAGTGGTGATGAAAGATGGAATGATTGCCCAATCAGGAAAGTACAATGATCTACTGAATTCAGGATTGGATTTTAGTGCTCTTGTAGCTGCACATGAGTCCTCTATGGAACTAGTAGAACAAGGTGCTGCAGGTGAAAGTTTTGACAAACCAATTAAATCTCCAAAGGCAGCTCCTAATCATCGAGAAACTAATGGCGAAAGCAATTCTCTTGACCAGCCCAAGTCTAAGAAAGAAAATTCTAAACTCATCAAAGAAGAGGAGAGAGAAACTGGGCAAATCAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGATGGTGGGGTGTTACAGTAGTGGTCCTTTTTTCTGTGTTGTGGCAAGCATCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCCGCAGTGCGCGCTGAACTGTTTGATCCTTCTGTGTTTATTTCCGTCTACGCCATTATCGCTGTAGTTTCCCTTGTTTTGATCGTTCTAAGAACGTACTCTGTCACTGTCGTGGGGCTAAAGACAGCACAGATTTTCTTCTCACAAATTCTTAATAGCATCTTACATGCACCCATGTCTTTCTTCGACACTACTCCATCAGGAAGAATTCTAAGCAGGGCATCGACTGATCAGACCAATGTTGATATCTTCATCCCCCTGTTCATGAACTTTGCTTTGGCTATGTACATCACAGTAGTCAGCATCATCATAATCACATGTCAAAATTCTTGGCCAACAACTTTCTTGCTAATTCCTCTTATTTGGTTGAACGTTTGGTACCGGCGCTATTATCTCGCTTCATCCCGTGAATTGACTCGTCTGGACTCAATTACAAAAGCACCTGTCATTCATCATTTCTCTGAAAGCATTTCTGGGGTCATGACAATCCGTGCATTCAAAAGGCAGAAAGAATTCAGTGAGGAAAATGTTAAACGGGTTAATGATAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGAGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCTTAATGTTTTGCTGTTCTACTTTATTCATGATCATGTTACCCAGCAGCATCATAAAACCAGAAAATGTTGGTTTATCACTCTCCTATGGAATATCCTTAAATTCCGTGCTGTTCTTTGCGGTATACATGAGCTGCTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAGCAGTTCACAAATATTCCATCAGAATCAGCATGGAAAATTGAAGGTCGTTCTCCTCCTTCAAATTGGCCTGGTCATGGCAATGTTGATATCAAGGACTTGCAGGTCAGATATCGTCCAAACACTCCTCTGGTTCTTAAAGGCATTACTTTAAGCATTAGTGGAGGAGAGAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGAAAATCAACTTTAATTCAAGTTTTCTTCAGGCTGGTGGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATATCCGTTTTAGGACTTCATGATCTTCGATCTCGGTTTGGTATCATCCCTCAGGAGCCTGTCCTTTTTGAAGGAACTGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGAAGAAGAGATATGGAGGAGTCTTGACCGTTGTCAACTAAAAGGTGTAGTGGCTGCTAAGGCTGAGAAACTTGATGCTTTAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGCTACTTTGTTTAGGGCGGGTTATGCTTAAGCAAAGTGGGCTATTGTTCATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGCTGTAATTCAGAAGATCATCCGAGAGGACTTCGCATCGCGCACCATCATCAGCATTGCTCACAGAATACCAACAGTCATGGACTGCAATAGAGTACTAGTTGTTGATGCAGGGCGAGCTAAAGAATTTGACAAGCCCTCAAACTTGCTTCAAAGGCCATCGCTCTTTGGCGCGCTGGTTCAAGAGTATGCCAACCGCTCAAATGAACTATAA | 4527 | 0.4162 | MRSETSTWVTSLSCSTSGDVSFVSNLPHWLRFIFLSPCPQRALFSAVDVLLLLTFFVFALTKLYSRFTSNENNHSELNKPLIRNREASVTTTIWFKLTITVTSVLAILYTVACILVFTSSTQETWKVVDGVFWLVQAITQVILVILIIHEKRFEAVAHPLSLRIYWIANFIIVALFSASGVIRFVSVDVEETKHFSFLVDDIASFISLPLSLFLLFVAVKGSTGIKSSNDEMQPLNGDDTKPNDDVTGRKSSVTGFASASIISKAFWIWINPLLSKGYKAPLKIDDVPYLSPQHRAERMSVIFESKWPKSDESSKHPVRTTLLRVFWREIAFTAFLAVIRLSVMFVGPILLQSFVDFTAGKGSSPYEGYYLVLVLLCAKFVEVLATHHFNFNSQKLGMLIRCTLITSLYKKGLRLTCSARQDHGVGPIVNYMAVDAQQLSDMMLQLHAVWMMPFQLGIGLLLLYNCLGAATITALIGLLGIIGFILLSTGQNKKYQFNAMIKRDSRMKAVNEMLNYMRVIKFQAWEEHFNQRIQGFRESEFGWFSKFMYSVSGNIVVLWSAPLLISTLTFGTALLLGVPLDAGTVFTTTTVFKILQEPIRTFPQSMISLAQAMVSLGRLDKYMSSRELSEDSVERVRDCDGQTAVEVKDGTFSWDDDSKQQDLKHINLDINKGELTAIVGTVGSGKSSILASILGEMHKISGKVHVCGSTSYVAQTAWIQNGTIEENILFGLPMIRHKYNEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTVILVTHQVDFLHNVDLIVVMKDGMIAQSGKYNDLLNSGLDFSALVAAHESSMELVEQGAAGESFDKPIKSPKAAPNHRETNGESNSLDQPKSKKENSKLIKEEERETGQISLHIYKLYCTEAFGWWGVTVVVLFSVLWQASMMASDYWLAYETSAVRAELFDPSVFISVYAIIAVVSLVLIVLRTYSVTVVGLKTAQIFFSQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDIFIPLFMNFALAMYITVVSIIIITCQNSWPTTFLLIPLIWLNVWYRRYYLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFKRQKEFSEENVKRVNDNLRMDFHNFSSNEWLGFRLELLGSLMFCCSTLFMIMLPSSIIKPENVGLSLSYGISLNSVLFFAVYMSCFIENKMVSVERIKQFTNIPSESAWKIEGRSPPSNWPGHGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTEEEIWRSLDRCQLKGVVAAKAEKLDALVVDNGDNWSVGQRQLLCLGRVMLKQSGLLFMDEATASVDSQTDAVIQKIIREDFASRTIISIAHRIPTVMDCNRVLVVDAGRAKEFDKPSNLLQRPSLFGALVQEYANRSNEL | 1508 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal12g0248 | 1508 | Gene3D | ABC transporter type 1, transmembrane domain | 317 | 627 | IPR036640 | GO:0005524|GO:0016021 | |
Lal12g0248 | 1508 | Gene3D | ABC transporter type 1, transmembrane domain | 911 | 1247 | IPR036640 | GO:0005524|GO:0016021 | |
Lal12g0248 | 1508 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1257 | 1499 | IPR027417 | - | |
Lal12g0248 | 1508 | MobiDBLite | consensus disorder prediction | 909 | 923 | - | - | |
Lal12g0248 | 1508 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 645 | 868 | IPR003439 | GO:0005524 | |
Lal12g0248 | 1508 | CDD | ABC_6TM_ABCC_D2 | 949 | 1241 | IPR044726 | GO:0140359 | |
Lal12g0248 | 1508 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1266 | 1500 | IPR003439 | GO:0005524 | |
Lal12g0248 | 1508 | SUPERFAMILY | ABC transporter transmembrane region | 322 | 627 | IPR036640 | GO:0005524|GO:0016021 | |
Lal12g0248 | 1508 | SUPERFAMILY | ABC transporter transmembrane region | 946 | 1246 | IPR036640 | GO:0005524|GO:0016021 | |
Lal12g0248 | 1508 | CDD | ABC_6TM_ABCC_D1 | 332 | 619 | IPR044746 | GO:0140359 | |
Lal12g0248 | 1508 | Gene3D | - | 639 | 872 | IPR027417 | - | |
Lal12g0248 | 1508 | Gene3D | - | 1250 | 1498 | IPR027417 | - | |
Lal12g0248 | 1508 | PANTHER | ABC TRANSPORTER C FAMILY MEMBER 4 | 86 | 1507 | - | - | |
Lal12g0248 | 1508 | SMART | AAA_5 | 672 | 853 | IPR003593 | - | |
Lal12g0248 | 1508 | SMART | AAA_5 | 1292 | 1476 | IPR003593 | - | |
Lal12g0248 | 1508 | ProSitePatterns | ABC transporters family signature. | 770 | 784 | IPR017871 | GO:0005524 | |
Lal12g0248 | 1508 | MobiDBLite | consensus disorder prediction | 884 | 923 | - | - | |
Lal12g0248 | 1508 | CDD | ABCC_MRP_domain1 | 645 | 844 | - | - | |
Lal12g0248 | 1508 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 86 | 1507 | - | - | |
Lal12g0248 | 1508 | Coils | Coil | 1137 | 1157 | - | - | |
Lal12g0248 | 1508 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 642 | 866 | IPR027417 | - | |
Lal12g0248 | 1508 | Pfam | ABC transporter transmembrane region | 950 | 1194 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lal12g0248 | 1508 | Pfam | ABC transporter transmembrane region | 332 | 598 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lal12g0248 | 1508 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 331 | 611 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lal12g0248 | 1508 | CDD | ABCC_MRP_domain2 | 1264 | 1484 | - | - | |
Lal12g0248 | 1508 | Pfam | ABC transporter | 1283 | 1431 | IPR003439 | GO:0005524 | |
Lal12g0248 | 1508 | Pfam | ABC transporter | 663 | 796 | IPR003439 | GO:0005524 | |
Lal12g0248 | 1508 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 951 | 1229 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal12g0248 | Lal-Chr12 | 1770524 | 1777758 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal12g0248 | 645 | 861 | Calmodulin-binding Proteins | AT2G36910 | 32.189 | 6.11e-25 | 111 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal12g0248 | - | K05666 | gmx:100793361 | 2461.8 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal12g0248 | 12 | 1770524 | 1777758 | Lal12g0248 | 12 | 1770524 | 1777758 | ECH |