Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0248 ATGCGGTCTGAAACTTCAACTTGGGTCACTTCCCTTTCATGTTCAACCTCAGGAGATGTTTCATTTGTTTCAAATCTACCTCATTGGCTTAGATTCATTTTCCTCTCTCCATGTCCTCAGAGAGCACTTTTCTCTGCTGTTGATGTCTTACTCTTGTTGACTTTCTTTGTGTTTGCCCTCACAAAACTCTATTCTAGGTTCACCTCTAATGAGAACAACCACTCAGAACTAAACAAGCCTCTTATAAGAAACAGAGAAGCTTCTGTCACAACAACAATATGGTTCAAGCTAACAATAACTGTAACATCTGTTTTGGCCATTTTGTACACTGTTGCTTGTATTTTGGTTTTTACCAGTTCCACACAGGAGACATGGAAGGTAGTTGATGGAGTGTTTTGGTTAGTTCAGGCCATAACACAAGTTATACTTGTAATATTGATTATTCATGAGAAAAGATTTGAAGCTGTTGCACATCCTTTATCCCTTAGGATTTATTGGATTGCAAATTTTATCATTGTTGCTTTGTTCTCAGCTTCTGGTGTTATTCGTTTTGTCTCTGTGGATGTAGAGGAAACCAAACACTTCAGCTTCTTGGTGGATGACATAGCTTCATTCATTTCTCTCCCTCTGTCACTTTTTCTGCTATTTGTTGCAGTTAAAGGATCCACTGGGATTAAGTCCAGCAACGACGAAATGCAACCGCTTAATGGTGATGATACCAAGCCAAATGATGATGTTACTGGGAGAAAATCCAGTGTTACTGGCTTTGCCTCAGCTTCTATAATATCCAAGGCCTTTTGGATTTGGATAAACCCCTTATTGAGCAAAGGGTATAAGGCACCACTGAAGATTGATGATGTTCCATACCTTTCTCCACAGCATAGAGCTGAGAGGATGTCAGTGATCTTTGAATCAAAATGGCCTAAATCAGATGAGAGTTCAAAGCATCCGGTTCGAACCACATTGCTTCGGGTCTTCTGGAGGGAAATAGCCTTCACTGCATTCCTTGCTGTTATCAGGTTAAGTGTCATGTTTGTAGGGCCTATTCTCTTACAGAGTTTTGTTGATTTCACAGCAGGGAAGGGAAGCTCTCCATATGAAGGATACTACCTTGTGTTGGTTCTCCTCTGTGCTAAATTTGTGGAAGTTTTGGCAACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATAAGATGCACTCTCATCACTTCCTTGTACAAGAAGGGGCTGAGGCTAACATGTTCAGCTCGGCAGGACCATGGTGTTGGGCCTATTGTGAATTACATGGCTGTTGATGCACAACAACTCTCTGATATGATGCTGCAGCTACATGCTGTGTGGATGATGCCATTTCAACTTGGTATTGGCTTATTATTGCTTTATAATTGTTTAGGTGCAGCAACAATTACAGCTTTGATTGGACTTCTTGGTATTATTGGGTTCATTTTGTTAAGTACTGGACAAAACAAAAAGTACCAATTTAATGCAATGATAAAGCGTGACTCAAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTGATCAAGTTCCAGGCATGGGAAGAGCATTTCAACCAGAGAATTCAGGGGTTCCGTGAGTCGGAGTTTGGGTGGTTTTCCAAGTTTATGTACTCAGTTTCTGGCAACATTGTTGTGTTGTGGAGTGCACCGTTATTGATATCAACTCTCACATTTGGCACCGCGCTTTTGCTTGGAGTTCCACTTGATGCTGGGACAGTTTTCACCACCACAACCGTGTTTAAGATCCTGCAAGAACCTATTAGGACCTTCCCACAGTCTATGATATCTCTTGCACAAGCAATGGTGTCACTGGGAAGGTTAGATAAGTACATGTCTAGCAGGGAATTATCAGAAGATTCGGTTGAGAGAGTGAGGGATTGTGATGGACAAACTGCTGTGGAGGTTAAAGATGGTACCTTTAGCTGGGATGATGATTCTAAACAGCAGGACTTGAAACATATTAATTTGGATATCAATAAGGGTGAGCTTACTGCTATAGTTGGGACTGTAGGGTCAGGAAAGTCTTCTATCCTTGCTTCAATTCTTGGTGAGATGCACAAAATTTCTGGAAAGGTTCATGTTTGTGGGAGTACTTCTTATGTTGCACAAACAGCATGGATTCAAAATGGGACAATTGAAGAAAACATTCTCTTTGGATTGCCCATGATCAGACACAAGTACAATGAAGTTGTCAGGGTTTGTTGCTTAGAGAAAGACCTGGAAATGATGGAGTATGGAGATCAGACAGAGATTGGAGAACGTGGCATCAATCTAAGCGGGGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATATCAAGACTGTGATATATATCTTCTCGACGATGTTTTCAGTGCTGTTGATGCGCATACCGGCTCTGAAATATTTAAGGAATGCGTGAGAGGAGCTCTAAAAGGCAAGACTGTTATTCTTGTCACACACCAAGTAGACTTCCTACATAATGTGGATCTTATAGTGGTGATGAAAGATGGAATGATTGCCCAATCAGGAAAGTACAATGATCTACTGAATTCAGGATTGGATTTTAGTGCTCTTGTAGCTGCACATGAGTCCTCTATGGAACTAGTAGAACAAGGTGCTGCAGGTGAAAGTTTTGACAAACCAATTAAATCTCCAAAGGCAGCTCCTAATCATCGAGAAACTAATGGCGAAAGCAATTCTCTTGACCAGCCCAAGTCTAAGAAAGAAAATTCTAAACTCATCAAAGAAGAGGAGAGAGAAACTGGGCAAATCAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGATGGTGGGGTGTTACAGTAGTGGTCCTTTTTTCTGTGTTGTGGCAAGCATCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCCGCAGTGCGCGCTGAACTGTTTGATCCTTCTGTGTTTATTTCCGTCTACGCCATTATCGCTGTAGTTTCCCTTGTTTTGATCGTTCTAAGAACGTACTCTGTCACTGTCGTGGGGCTAAAGACAGCACAGATTTTCTTCTCACAAATTCTTAATAGCATCTTACATGCACCCATGTCTTTCTTCGACACTACTCCATCAGGAAGAATTCTAAGCAGGGCATCGACTGATCAGACCAATGTTGATATCTTCATCCCCCTGTTCATGAACTTTGCTTTGGCTATGTACATCACAGTAGTCAGCATCATCATAATCACATGTCAAAATTCTTGGCCAACAACTTTCTTGCTAATTCCTCTTATTTGGTTGAACGTTTGGTACCGGCGCTATTATCTCGCTTCATCCCGTGAATTGACTCGTCTGGACTCAATTACAAAAGCACCTGTCATTCATCATTTCTCTGAAAGCATTTCTGGGGTCATGACAATCCGTGCATTCAAAAGGCAGAAAGAATTCAGTGAGGAAAATGTTAAACGGGTTAATGATAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGAGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCTTAATGTTTTGCTGTTCTACTTTATTCATGATCATGTTACCCAGCAGCATCATAAAACCAGAAAATGTTGGTTTATCACTCTCCTATGGAATATCCTTAAATTCCGTGCTGTTCTTTGCGGTATACATGAGCTGCTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAGCAGTTCACAAATATTCCATCAGAATCAGCATGGAAAATTGAAGGTCGTTCTCCTCCTTCAAATTGGCCTGGTCATGGCAATGTTGATATCAAGGACTTGCAGGTCAGATATCGTCCAAACACTCCTCTGGTTCTTAAAGGCATTACTTTAAGCATTAGTGGAGGAGAGAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGAAAATCAACTTTAATTCAAGTTTTCTTCAGGCTGGTGGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATATCCGTTTTAGGACTTCATGATCTTCGATCTCGGTTTGGTATCATCCCTCAGGAGCCTGTCCTTTTTGAAGGAACTGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGAAGAAGAGATATGGAGGAGTCTTGACCGTTGTCAACTAAAAGGTGTAGTGGCTGCTAAGGCTGAGAAACTTGATGCTTTAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGCTACTTTGTTTAGGGCGGGTTATGCTTAAGCAAAGTGGGCTATTGTTCATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGCTGTAATTCAGAAGATCATCCGAGAGGACTTCGCATCGCGCACCATCATCAGCATTGCTCACAGAATACCAACAGTCATGGACTGCAATAGAGTACTAGTTGTTGATGCAGGGCGAGCTAAAGAATTTGACAAGCCCTCAAACTTGCTTCAAAGGCCATCGCTCTTTGGCGCGCTGGTTCAAGAGTATGCCAACCGCTCAAATGAACTATAA 4527 0.4162 MRSETSTWVTSLSCSTSGDVSFVSNLPHWLRFIFLSPCPQRALFSAVDVLLLLTFFVFALTKLYSRFTSNENNHSELNKPLIRNREASVTTTIWFKLTITVTSVLAILYTVACILVFTSSTQETWKVVDGVFWLVQAITQVILVILIIHEKRFEAVAHPLSLRIYWIANFIIVALFSASGVIRFVSVDVEETKHFSFLVDDIASFISLPLSLFLLFVAVKGSTGIKSSNDEMQPLNGDDTKPNDDVTGRKSSVTGFASASIISKAFWIWINPLLSKGYKAPLKIDDVPYLSPQHRAERMSVIFESKWPKSDESSKHPVRTTLLRVFWREIAFTAFLAVIRLSVMFVGPILLQSFVDFTAGKGSSPYEGYYLVLVLLCAKFVEVLATHHFNFNSQKLGMLIRCTLITSLYKKGLRLTCSARQDHGVGPIVNYMAVDAQQLSDMMLQLHAVWMMPFQLGIGLLLLYNCLGAATITALIGLLGIIGFILLSTGQNKKYQFNAMIKRDSRMKAVNEMLNYMRVIKFQAWEEHFNQRIQGFRESEFGWFSKFMYSVSGNIVVLWSAPLLISTLTFGTALLLGVPLDAGTVFTTTTVFKILQEPIRTFPQSMISLAQAMVSLGRLDKYMSSRELSEDSVERVRDCDGQTAVEVKDGTFSWDDDSKQQDLKHINLDINKGELTAIVGTVGSGKSSILASILGEMHKISGKVHVCGSTSYVAQTAWIQNGTIEENILFGLPMIRHKYNEVVRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTVILVTHQVDFLHNVDLIVVMKDGMIAQSGKYNDLLNSGLDFSALVAAHESSMELVEQGAAGESFDKPIKSPKAAPNHRETNGESNSLDQPKSKKENSKLIKEEERETGQISLHIYKLYCTEAFGWWGVTVVVLFSVLWQASMMASDYWLAYETSAVRAELFDPSVFISVYAIIAVVSLVLIVLRTYSVTVVGLKTAQIFFSQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDIFIPLFMNFALAMYITVVSIIIITCQNSWPTTFLLIPLIWLNVWYRRYYLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFKRQKEFSEENVKRVNDNLRMDFHNFSSNEWLGFRLELLGSLMFCCSTLFMIMLPSSIIKPENVGLSLSYGISLNSVLFFAVYMSCFIENKMVSVERIKQFTNIPSESAWKIEGRSPPSNWPGHGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTEEEIWRSLDRCQLKGVVAAKAEKLDALVVDNGDNWSVGQRQLLCLGRVMLKQSGLLFMDEATASVDSQTDAVIQKIIREDFASRTIISIAHRIPTVMDCNRVLVVDAGRAKEFDKPSNLLQRPSLFGALVQEYANRSNEL 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0248 1508 Gene3D ABC transporter type 1, transmembrane domain 317 627 IPR036640 GO:0005524|GO:0016021
Lal12g0248 1508 Gene3D ABC transporter type 1, transmembrane domain 911 1247 IPR036640 GO:0005524|GO:0016021
Lal12g0248 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1257 1499 IPR027417 -
Lal12g0248 1508 MobiDBLite consensus disorder prediction 909 923 - -
Lal12g0248 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 645 868 IPR003439 GO:0005524
Lal12g0248 1508 CDD ABC_6TM_ABCC_D2 949 1241 IPR044726 GO:0140359
Lal12g0248 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1266 1500 IPR003439 GO:0005524
Lal12g0248 1508 SUPERFAMILY ABC transporter transmembrane region 322 627 IPR036640 GO:0005524|GO:0016021
Lal12g0248 1508 SUPERFAMILY ABC transporter transmembrane region 946 1246 IPR036640 GO:0005524|GO:0016021
Lal12g0248 1508 CDD ABC_6TM_ABCC_D1 332 619 IPR044746 GO:0140359
Lal12g0248 1508 Gene3D - 639 872 IPR027417 -
Lal12g0248 1508 Gene3D - 1250 1498 IPR027417 -
Lal12g0248 1508 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 86 1507 - -
Lal12g0248 1508 SMART AAA_5 672 853 IPR003593 -
Lal12g0248 1508 SMART AAA_5 1292 1476 IPR003593 -
Lal12g0248 1508 ProSitePatterns ABC transporters family signature. 770 784 IPR017871 GO:0005524
Lal12g0248 1508 MobiDBLite consensus disorder prediction 884 923 - -
Lal12g0248 1508 CDD ABCC_MRP_domain1 645 844 - -
Lal12g0248 1508 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 86 1507 - -
Lal12g0248 1508 Coils Coil 1137 1157 - -
Lal12g0248 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 866 IPR027417 -
Lal12g0248 1508 Pfam ABC transporter transmembrane region 950 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0248 1508 Pfam ABC transporter transmembrane region 332 598 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0248 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 611 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0248 1508 CDD ABCC_MRP_domain2 1264 1484 - -
Lal12g0248 1508 Pfam ABC transporter 1283 1431 IPR003439 GO:0005524
Lal12g0248 1508 Pfam ABC transporter 663 796 IPR003439 GO:0005524
Lal12g0248 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1229 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0248 Lal-Chr12 1770524 1777758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0248 645 861 Calmodulin-binding Proteins AT2G36910 32.189 6.11e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0248 - K05666 gmx:100793361 2461.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0248 12 1770524 1777758 Lal12g0248 12 1770524 1777758 ECH