Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0246 ATGGTTGAAACTCGCCGTAGCTCCTCTTCTTCCAAGCGTACTCTCTCTTCTCCTTCTCCTTCAACCTCCAAACGATCCAAGGTTTCCGACGATGCGTCGCCATCAACCCTACCTGCTCCGGGAACTATTGCTCCGGTCAACGAATCTGGAATCGGAAATGATTCTCGAGAACCTGAGCTTCGGTCTGCTGATCTACCCGATACGGCGTCGTTGAAGCCGGTGGATGTTTGCGATGAAGATAAGCCTCCTTCTGAGCCCGTTGAAGGTGAGGATGTGGTGTCCCCGCAGTACCCAGGTGAAACTGCGACGGATGTGGATAAATCGAAGGCAGCAGCTGGTGCAGCGGCTGGTCGGTCGAAGAAACGGGTGACAAAAGCCACAAAATCTGCCCCAAAGGCTGCGTGGGGAAAGCTCATTTCTCAGTGTTCTCAGAATCCACACTTGTCCATATCCGAGCCTATCTTCACTGTTGGTCAAGGTCGTCACTGTAATTTATGGCTTAAAGATCCATCTGTTGGTAATGTATTGTGCAAGTTGAGTCACATAGAGCGTGGAGGTTCATCTATTGCATTACTGGAAATAACAGGGGGTAAAGGTTCTGTTCAAGTCAATGGTAAGACACACCGAAAGAATGTCCGTCTAATTTTGAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCCAGCAAGCATGCTTATATCTTCCAGCAGCTCACAAATAACAGTCTTACTACTGGCATCCCTTCATCTATGAGTATTTTAGAAGTCCAGAGTGCTCCAATGAATGGAATACAAGTGGAGGCTACATCTGGGGACTCTTCAGCTGTTGCTAGAGCATCAAAATTGGCCTCATTATCTAATCTTCATAAAGATTTATCTCTCCTCCCACCAACTGCTAAGACTGGCAAGAATGTCCAACAGAATACTGACATTTCATCACCTCCTTCTGGTCACGGGGATGATACTCCGGACAATGAAATGAAACCTAGCCCCAATAATGATGAACCATCTGGAGGTGTTTATGCTGACAAAACTGTTCTTGCATCCTCTATCGCTGGTAATGAAAATCCCAGCATTGACACGATGGAAGTCGATGCCGATGTGGATGCAGATGTTGGCAAGATTACTGCTTCCTTCGAGTTGAGGCCATTATTGCGGTTGCTTGAGGGTTCTTGTCCTGAACTTGATTTAAGCGGTAATATTTCTAAAATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACACTGACATTATTAGCATCAACCAAGCACCAAGCATTCAAGGAGAGTTTACAACAAAGAATCATCAATGCTGACAATATTGATGTCTCATTCGAAGATTTCCCTTATTATCTAAGTGATACAACAAAGAATGTCTTGACTTCTTCTACATATATTCATTTGAAGTGCGATGGCTTTGGAAAATATGCTTCAGACCTCCCATCAGTGTCCCCACGGATATTGTTATCCGGTCCTACAGGTTCGGAAATATATCAAGAGACTTTGTGCAAGGCACTTGCTAAGCATTTTGGCGCCAAGATATTAATTGTGGATTCTCTTTCCCTACCCGGTGGGGCACCATCAAAGGAAGTTGATTCTGCCAAAGAAACTTCGAAGTCTGAAAGACTATCTGTGTTTTCTAAGAGAAGTACCCAGGCCACCACATCACAGCAGAAGAAACCAGCTTCTAGTGTAGATGCTGAAATTATAGGTGGTTCAACATTAAGTTCTCAGGCTACGCTTAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCACTATTCTTAAAACAGGTGATAGAGTAAAATTTGTTGGTAACTTCCCTTCTGCTGTCTCATCGCTACAGAGTTCAAGGGGACCAAGCTATGGTTCCAGGGGTAAAGTTCTCCTTGCTTTTGAAGATAACGGGTCTTCAAAAATCGGAGTTAGGTTTGACAAACCAATTCCAGATGGTAATGATCTTGGAGGCCTTTGCGAAGTTGATCATGGATTCTTTTGTTCTGCAAATCATTTACTAAGAGTAGATGGTACTGGAGGAGATGACATTGACAAGCTTGCAATTAATGACATCTTTGAGGTTGTTTGTAATGAGAGTAAAAGTGGTGCTCTAGTGTTGTTCATTAAGGATATAGAGAAGGCAATGGTTGGTAATTCTGAAAATTTGAAAAGTAAATTTGAAAACTTGCCACAGAATGTTGTTGTAGTTGGCTCGCATACCCAGCTAGACAACCGTAAGGAAAAGACCCATCCAGGAGGCCTTCTATTTACGAAGTTTGGGAGCAATCAGACAGCACTACTCGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTTAATCGCCTTTTCCCAAACAGGGTGACAATACAACTGCCTCAGGATGAGGCTTTACTTTCTGACTGGAAGCAGCAGCTAGAACGCGACATTGGAACTATGAAAGCCCAGGCCAATCTTGTCAGCATTCACTCAGTTCTCAACAGGATAGGATTGAATTGCTCTGACCTTGAGTCACTTTGCATCAAAGATCAAACCCTATCAACTGAAAGTGTGGAAAGGATAATTGGCTGGGCTATAAGTTACCATTTTATGCATTCCACTGAGTCTTCTAACAAAGACTCCAATTTTGTGATATCTGCAGAAAGTATTAAGTATGGGCTAAGCATTCTACAGGGCATTCAAAACGAAAACAAGAGCTCAAAAAAATCACTGAAAGATGTGGTAACCGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTGACATTTGATGATATTGGAGCATTAGAGAATGTGAAAGATACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGACCTGAATTGTTTTGTAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCACCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATAAATATTTCAATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGGGAGAAATATGTTAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGCTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACCAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACTAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGAAGGCTTCCACGCAGATTGATGGTTAATCTGCCAGATGCTCCAAACAGAGAAAAAATTATGAAAGTCATTTTAGCGAAAGAAGATCTGGCACCAGATGTTGAATTGGAAGCAATAGCAAATATGACTGATGGATATTCGGGGAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGCCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGTTCAGCATTGGCCGAGAACAAACCTTTACCTGTATTGCATAGTAGTGTTGACATTCGTCCCTTGAAGATGGAGGATTTTAGATACGCACATGAGCAGGTTTGTGCAAGTGTGTCATCAGAATCGTCAAATATGAATGAGCTACTCCAATGGAATGACCTTTACGGAGAAGGTGGATCAAGAAAAATGAGATCCTTGAGCTATTTCATGTAA 3750 0.4253 MVETRRSSSSSKRTLSSPSPSTSKRSKVSDDASPSTLPAPGTIAPVNESGIGNDSREPELRSADLPDTASLKPVDVCDEDKPPSEPVEGEDVVSPQYPGETATDVDKSKAAAGAAAGRSKKRVTKATKSAPKAAWGKLISQCSQNPHLSISEPIFTVGQGRHCNLWLKDPSVGNVLCKLSHIERGGSSIALLEITGGKGSVQVNGKTHRKNVRLILSGGDEVVFGSSSKHAYIFQQLTNNSLTTGIPSSMSILEVQSAPMNGIQVEATSGDSSAVARASKLASLSNLHKDLSLLPPTAKTGKNVQQNTDISSPPSGHGDDTPDNEMKPSPNNDEPSGGVYADKTVLASSIAGNENPSIDTMEVDADVDADVGKITASFELRPLLRLLEGSCPELDLSGNISKILEERRELRELLKDVDTLTLLASTKHQAFKESLQQRIINADNIDVSFEDFPYYLSDTTKNVLTSSTYIHLKCDGFGKYASDLPSVSPRILLSGPTGSEIYQETLCKALAKHFGAKILIVDSLSLPGGAPSKEVDSAKETSKSERLSVFSKRSTQATTSQQKKPASSVDAEIIGGSTLSSQATLKQEVSTASSKGTILKTGDRVKFVGNFPSAVSSLQSSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKPIPDGNDLGGLCEVDHGFFCSANHLLRVDGTGGDDIDKLAINDIFEVVCNESKSGALVLFIKDIEKAMVGNSENLKSKFENLPQNVVVVGSHTQLDNRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLNRLFPNRVTIQLPQDEALLSDWKQQLERDIGTMKAQANLVSIHSVLNRIGLNCSDLESLCIKDQTLSTESVERIIGWAISYHFMHSTESSNKDSNFVISAESIKYGLSILQGIQNENKSSKKSLKDVVTENEFEKKLLGDVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKIMKVILAKEDLAPDVELEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSSALAENKPLPVLHSSVDIRPLKMEDFRYAHEQVCASVSSESSNMNELLQWNDLYGEGGSRKMRSLSYFM 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0246 1249 SUPERFAMILY SMAD/FHA domain 135 232 IPR008984 GO:0005515
Lal12g0246 1249 Pfam AAA+ lid domain 1138 1173 IPR041569 -
Lal12g0246 1249 MobiDBLite consensus disorder prediction 1 42 - -
Lal12g0246 1249 MobiDBLite consensus disorder prediction 73 87 - -
Lal12g0246 1249 Pfam ATPase family associated with various cellular activities (AAA) 985 1114 IPR003959 GO:0005524|GO:0016887
Lal12g0246 1249 SMART AAA_5 981 1118 IPR003593 -
Lal12g0246 1249 CDD AAA 983 1116 - -
Lal12g0246 1249 Gene3D - 943 1222 IPR027417 -
Lal12g0246 1249 CDD FHA 160 235 IPR000253 GO:0005515
Lal12g0246 1249 Gene3D - 134 243 - -
Lal12g0246 1249 MobiDBLite consensus disorder prediction 298 318 - -
Lal12g0246 1249 MobiDBLite consensus disorder prediction 293 340 - -
Lal12g0246 1249 MobiDBLite consensus disorder prediction 1 127 - -
Lal12g0246 1249 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1249 - -
Lal12g0246 1249 ProSitePatterns AAA-protein family signature. 1088 1107 IPR003960 GO:0005524|GO:0016887
Lal12g0246 1249 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1249 - -
Lal12g0246 1249 MobiDBLite consensus disorder prediction 530 570 - -
Lal12g0246 1249 Gene3D - 1117 1211 - -
Lal12g0246 1249 MobiDBLite consensus disorder prediction 548 570 - -
Lal12g0246 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 944 1222 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0246 Lal-Chr12 1739470 1750894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0246 944 1192 Calmodulin-binding Proteins AT3G56690 39.062 6.51e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0246 - - gmx:100801477 1949.48