Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0242 ATGTCATTTAGGAAGGGGTTTGAGGTGAAGTTTGGGTATGGAATGAGATCTAAATCACAGACAAAGCGTGTTGTTGGTGAAGTTAATTGTAGTTTAGTTGTGGTTGATGGATTGAAGCAGAGTTGTTGGGCTAATATGCCTACTGAGTTGTTAAGGGATGTGCTCATCAGAATTGAGACTTCTCAAGATACATGGCCTTCTCGAAAACATGTCGTGGCCTGCGCCGGAGTTTGTCGCAGTTGGAGACAAATCATTCAAGAAATTGTTAAACCTCCTCAGCTTTCCACTCATTTGACATTCCCTATCTCCTTGAAACAGCCTGGTCCAAGGGGCTCTCTTATTCAGTGCTACATTAAACGAAACCGCAGTAATCAAATATATTATCTGTTCCTTAGTTTAAACCAAGCCTCAACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACTCACACAGACTATATCATCTCTCTAAACTACGATGATGTATCAAGAGGCAGCAACACCTATATTGGGAAGTTGAGATCCAACTTTCTGGGTACCAAATTCACAGTGTATGATGCACACCCTGCTATTTGTGGAGCCAAAGTTGCAAAGTCTCGTTCCACCAGGCTAGTTAGTTCCAAGCAAGTCTCTCCGAGAGTTCCTGCTGGCAACTATCCTGTTGCACGTGTATCATATGATCTGAATGTTTTGGGTTCCAGAGGCCCCAGGATAATGCAATGCGTTATGGATGCCATCCCTGCTTCAGCTGTTGAACCCGGAGGTGTGGTCCCTACTCAGACTCAACTTCTCCATAGCAGAATTGATACTTCTCCATCTATCCCTTTCTTTAGATCAAAATCAACCCGCATGGAAAATCTCCAATCATTGCCTTTGACTTCTCAAAATGAGGGAACACTAGTATTACGGAACAAGTCTCCTAGATGGCATGAACAACTGCAATGCTGGTGTCTGAACTTCAATGGACGAGTTACAGTTGCTTCAGTGAAAAACTTTCAGCTGGTTGCATCTCCTAAAAATGGGGTTTCTGAGCAGGCTCAAGAAACTGTTATTCTACAGTTTGGAAAAGTTGGAAAGGACGTATTCACCATGGATTACCAGTATCCGATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTCGACACCAAGATTGCTTGTGAATGA 1188 0.4343 MSFRKGFEVKFGYGMRSKSQTKRVVGEVNCSLVVVDGLKQSCWANMPTELLRDVLIRIETSQDTWPSRKHVVACAGVCRSWRQIIQEIVKPPQLSTHLTFPISLKQPGPRGSLIQCYIKRNRSNQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNYDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPAICGAKVAKSRSTRLVSSKQVSPRVPAGNYPVARVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVVPTQTQLLHSRIDTSPSIPFFRSKSTRMENLQSLPLTSQNEGTLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQETVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0242 395 ProSitePatterns Tub family signature 2. 380 395 IPR018066 -
Lal12g0242 395 Gene3D Tubby Protein; Chain A 100 395 IPR025659 -
Lal12g0242 395 PANTHER TUBBY-RELATED 4 394 - -
Lal12g0242 395 Pfam Tub family 104 390 IPR000007 -
Lal12g0242 395 SUPERFAMILY Tubby C-terminal domain-like 92 395 IPR025659 -
Lal12g0242 395 Pfam F-box domain 43 89 IPR001810 GO:0005515
Lal12g0242 395 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 4 394 - -
Lal12g0242 395 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Lal12g0242 395 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Lal12g0242 395 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Lal12g0242 395 PRINTS Tubby superfamily signature 307 324 IPR000007 -
Lal12g0242 395 PRINTS Tubby superfamily signature 325 341 IPR000007 -
Lal12g0242 395 PRINTS Tubby superfamily signature 352 371 IPR000007 -
Lal12g0242 395 PRINTS Tubby superfamily signature 373 395 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0242 Lal-Chr12 1694960 1698492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0242 4 395 TUB Transcription Factor Family AT2G47900 75.190 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal12g0242 Tub 1.5e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0242 K19600 - gmx:100809257 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0242 12 1694960 1698492 Lal12g0242 12 1694960 1698492 ECH