Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0232 ATGGATGTGATTCAATGGCAGAAACAGCTCCTCGATCACCAAGCTGTTATGCTTCGAGAGGGATTTCTGGATGATCAATTCATCCAGCTTCAAAAACTGCAAGATGATAGCAGTCCTGATTTTGTGATTGAGGTTATGACTATGTTCTTTGAGGATTCTGAGAATCTCCTCAACAACATGAAACGAGCTTTAGAACAAGTACCTGTGGCTTTCAGACAAGTAGATGCTCATGTCCATCAATTCAAGGGAAGCAGTGCCAGTGTTGGGGCTGGCAGGATAAAAAATGTCTGCGCCACTTTCAGAGATTTTTGTGATGCTCAGAACCTGGAAGGGTGTGTTAGATGTTTGCAACAGTTGCAACATGAATATTCTCTGCTGAAGAACAATCTTCAACCCTTATTTAGGCTGCGGCAACAAATCCAGGCTGCTGGTGGTTCAATTCCTATAATCGACTAG 456 0.4298 MDVIQWQKQLLDHQAVMLREGFLDDQFIQLQKLQDDSSPDFVIEVMTMFFEDSENLLNNMKRALEQVPVAFRQVDAHVHQFKGSSASVGAGRIKNVCATFRDFCDAQNLEGCVRCLQQLQHEYSLLKNNLQPLFRLRQQIQAAGGSIPIID 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0232 151 PANTHER - 3 149 IPR045871 GO:0000160|GO:0009927|GO:0043424
Lal12g0232 151 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 5 3 149 - -
Lal12g0232 151 Gene3D HPT domain 1 151 IPR036641 GO:0000160
Lal12g0232 151 CDD HPT 44 120 IPR008207 GO:0000160
Lal12g0232 151 Pfam Hpt domain 44 128 IPR008207 GO:0000160
Lal12g0232 151 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 4 140 IPR036641 GO:0000160
Lal12g0232 151 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 143 IPR008207 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0232 Lal-Chr12 1639723 1642455 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0232 K14490 - gmx:100803400 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0232 12 1639723 1642455 Lal13g0672 13 4354647 4357341 ECH
Lal12g0232 12 1639723 1642455 Lal12g0232 12 1639723 1642455 ECH
Lal12g0606 12 4377288 4379356 Lal12g0232 12 1639723 1642455 ECH
Lal13g0199 13 1251729 1260840 Lal12g0232 12 1639723 1642455 ECH
Lal12g0232 12 1639723 1642455 Lal13g0199 13 1251729 1260840 LSH